SHOGoiN Cell ID: 0000000-004

SHOGoiN Cell Taxonomy

Homo sapiens & Mus musculus cell

No.Germ LayerDifferentiation StateSource AgeAnatomy IdCell Type IdAnatomy:level 1Anatomy:level 2Anatomy:level 3Anatomy:level 4-1Anatomy:level 4-2Anatomy:level 5-1Anatomy:level 5-2Anatomy:level 5-3Anatomy:level 6Cell TypeSynonymCL IdUBERON IdImage IdTissue Image ID
14:Mesodermal4:Terminally differentiated6:Fetus 7:Postnatal 8:Neonatal 9:Infant 10:Juvenile 11:Adult0000000004Immune system classBloodLeukocyteCL:0000738

SHOGoiN Cell Transcriptome

Expression Profile

GSM967506

GSM967507

SHOGoiN Cell Id0000000-0040000000-004
Project NameSequence Read ArchiveSequence Read Archive
Project IdSRP014428SRP014428
Assay IdSRP014428_T9SRP014428_T10
Project:project TitleFull-length mRNA-Seq from single-cell levels of RNA and individual circulating tumor cellsFull-length mRNA-Seq from single-cell levels of RNA and individual circulating tumor cells
Project:project Descriptionhttp://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE38495http://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE38495
Project:project Submission Date22-Jul-1222-Jul-12
Project:organization NameKarolinska InstitutetKarolinska Institutet
Project:stable Contact InformationDaniel Ramsk_ld, daniel.ramskold@licr.ki.seDaniel Ramsk_ld, daniel.ramskold@licr.ki.se
Project:reference Submission StatusPublishedPublished
Project:reference AuthorsRamsk_ld D, Luo S, Wang YC, Li R et al.Ramsk_ld D, Luo S, Wang YC, Li R et al.
Project:reference TitleFull-length mRNA-Seq from single-cell levels of RNA and individual circulating tumor cells.Full-length mRNA-Seq from single-cell levels of RNA and individual circulating tumor cells.
Project:reference Pubmed Id2282031822820318
Assay:assay TypeTranscriptomeTranscriptome
Assay:assay Factor0000000-0040000000-004
Source Cell:sample IdGSM967506GSM967507
Source Cell:SHOGoiN Cell Id0000000-0040000000-004
Source Cell:source Cell TypeLeucocyteLeucocyte
Source Cell:source OrganismHumanHuman
Source Cell:race Or Strain
Source Cell:age Or Stage
Source Cell:source Tissue Or OrganBloodBlood
Source Cell:source Cell Karyotype
Source Cell:cell Lineage
Source Cell:organism Genetic Information
Source Cell:health Status
Source Cell:source Provider
Technology:assay TechnologyRNA-seqRNA-seq
Technology:assay Detection InstrumentationMiSeqMiSeq
Technology:assay Detection Instrument VendorIlluminaIllumina
Technology:assessed MaterialpolyA RNApolyA RNA
Technology:source Cell Format
Technology:source Cell Preparation MethodSingle cell, culturedSingle cell, cultured
Technology:source Cell Identidication Method
Technology:source Cell Treatment
Data:data IdSRR522079SRR522080
Data:data TypeSequenceSequence
Data:data Processing Method
Data:data Processing Software And Version
Data:data Normalization MethodRPKMRPKM
Data:data Normalization Software Name And Version
Data:data Analytical Software And Versionrpkmforgenes.pyrpkmforgenes.py
Data:reference Sequence Sourcehg19hg19
Data:genome Annotation Ref

SHOGoiN Cell Marker

Cell Type NameImmune system/blood cell
Cell Type SubclassLeukocyte
SHOGoiN Cell Id0000000-004
Anatomical LocationBlood
Marker Molecule:nameReceptor-type tyrosine-protein phosphatase C (Leukocyte common antigen, L-CA, T200, CD45, PTPRC)
Marker Molecule:typeProtein
Marker Molecule:categoryCD molecule
Subcellular LocalizationPlasma membrane
Uniprot IdP08575
Gene Id
Source OrganismHuman
Referencehttps://www.beckmancoulter.com/wsrportal/page/itemDetails?itemNumber=6603838#2/10//0/25/1/0/asc/2/6603838///0/1//0/