SHOGoiN Cell ID: 1010000000000000000000-189

SHOGoiN Cell Taxonomy

Homo sapiens & Mus musculus cell

No.Germ LayerDifferentiation StateSource AgeAnatomy IdCell Type IdAnatomy:body PartAnatomy:organAnatomy:sub-organAnatomy:tissue 1Anatomy:tissue 2Anatomy:tissue 3Anatomy:tissue 4Anatomy:tissue 5-1Anatomy:tissue 5-2Anatomy:tissue 5-3Anatomy:tissue 5-4Cell TypeSynonymCL IdUBERON IdImage IdTissue Image ID
12 Ecotodermal4 Terminally differentiated7 Postnatal state 8 Neonatal state 9 Infant state 10 Juvenile 11 Adult1010000000000000000000189HeadBrainNeuronCL:0000540

SHOGoiN Cell Marker

Cell Type NameCentral nervous system cell:neuronCentral nervous system cell:neuronCentral nervous system cell:neuronCentral nervous system cell:neuronCentral nervous system cell:neuronCentral nervous system cell:neuronCentral nervous system cell:neuronCentral nervous system cell:neuronCentral nervous system cell:neuronCentral nervous system cell:neuronCentral nervous system cell:neuronCentral nervous system cell:neuronCentral nervous system cell:neuronCentral nervous system cell:neuronCentral nervous system cell:neuronCentral nervous system cell:neuronCentral nervous system cell:neuronCentral nervous system cell:neuronCentral nervous system cell:neuronCentral nervous system cell:neuronCentral nervous system cell:neuronCentral nervous system cell:neuronCentral nervous system cell:neuronCentral nervous system cell:neuronCentral nervous system cell:neuronCentral nervous system cell:neuronCentral nervous system cell:neuronCentral nervous system cell:neuronCentral nervous system cell:neuronCentral nervous system cell:neuronCentral nervous system cell:neuronCentral nervous system cell:neuronCentral nervous system cell:neuronCentral nervous system cell:neuronCentral nervous system cell:neuronCentral nervous system cell:neuronCentral nervous system cell:neuronCentral nervous system cell:neuronCentral nervous system cell:neuronCentral nervous system cell:neuronCentral nervous system cell:neuronCentral nervous system cell:neuronCentral nervous system cell:neuronCentral nervous system cell:neuronCentral nervous system cell:neuronCentral nervous system cell:neuronCentral nervous system cell:neuronCentral nervous system cell:neuronCentral nervous system cell:neuronCentral nervous system cell:neuronCentral nervous system cell:neuronCentral nervous system cell:neuronCentral nervous system cell:neuronCentral nervous system cell:neuronCentral nervous system cell:neuronCentral nervous system cell:neuronCentral nervous system cell:neuronCentral nervous system cell:neuronCentral nervous system cell:neuronCentral nervous system cell:neuronCentral nervous system cell:neuronCentral nervous system cell:neuronCentral nervous system cell:neuronGlutamatergic neuronCentral nervous system cell:neuronCentral nervous system cell:neuronCentral nervous system cell:neuronCentral nervous system cell:neuronCentral nervous system cell:neuronCentral nervous system cell:neuronCentral nervous system cell:neuronCentral nervous system cell:neuronCentral nervous system cell:neuronCentral nervous system cell:neuronCentral nervous system cell:neuronCentral nervous system cell:neuronCentral nervous system cell:neuronCentral nervous system cell:neuronCentral nervous system cell:neuronCentral nervous system cell:neuronCentral nervous system cell:neuronCentral nervous system cell:neuronCentral nervous system cell:neuronCentral nervous system cell:neuronCentral nervous system cell:neuronCentral nervous system cell:neuronCentral nervous system cell:neuronCentral nervous system cell:neuron
Cell Type SubclassCholinergic neuronCholinergic neuronCholinergic neuronCholinergic neuronCholinergic neurondifferentiated post-mitotic neuronal celldifferentiated post-mitotic neuronal celldifferentiated post-mitotic neuronal celldifferentiated post-mitotic neuronal celldifferentiated post-mitotic neuronal celldifferentiated post-mitotic neuronal celldifferentiated post-mitotic neuronal celldifferentiated post-mitotic neuronal cellDopaminergic neuronDopaminergic neuronDopaminergic neuronDopaminergic neuronDopaminergic neuronDopaminergic neuronDopaminergic neuronDopaminergic neuronDopaminergic neuronDopaminergic neuronDopaminergic neuronDopaminergic neuronGABAergic neuronGABAergic neuronGABAergic neuronGABAergic neuronGABAergic neuronGABAergic neuronGABAergic neuronGlutamatergic neuronGlutamatergic neuronGlutamatergic neuronGlutamatergic neuronGlutamatergic neuronGlutamatergic neuronGlutamatergic neuronGlutamatergic neuronGlutamatergic neuronMotorneuronMotorneuronMotorneuronMotorneuronMotorneuronMotorneuronMotorneuronMotorneuronMotorneuronMotorneuronMotorneuronMotorneuronMotorneuronMotorneuronMotorneuronSerotonergic neuronSerotonergic neuronSerotonergic neuronSerotonergic neuron
SHOGoiN Cell Id1010000000000000000000-1891010000000000000000000-1891010000000000000000000-1891010000000000000000000-1891010000000000000000000-1891010000000000000000000-1891010000000000000000000-1891010000000000000000000-1891010000000000000000000-1891010000000000000000000-1891010000000000000000000-1891010000000000000000000-1891010000000000000000000-1891010000000000000000000-1891010000000000000000000-1891010000000000000000000-1891010000000000000000000-1891010000000000000000000-1891010000000000000000000-1891010000000000000000000-1891010000000000000000000-1891010000000000000000000-1891010000000000000000000-1891010000000000000000000-1891010000000000000000000-1891010000000000000000000-1891010000000000000000000-1891010000000000000000000-1891010000000000000000000-1891010000000000000000000-1891010000000000000000000-1891010000000000000000000-1891010000000000000000000-1891010000000000000000000-1891010000000000000000000-1891010000000000000000000-1891010000000000000000000-1891010000000000000000000-1891010000000000000000000-1891010000000000000000000-1891010000000000000000000-1891010000000000000000000-1891010000000000000000000-1891010000000000000000000-1891010000000000000000000-1891010000000000000000000-1891010000000000000000000-1891010000000000000000000-1891010000000000000000000-1891010000000000000000000-1891010000000000000000000-1891010000000000000000000-1891010000000000000000000-1891010000000000000000000-1891010000000000000000000-1891010000000000000000000-1891010000000000000000000-1891010000000000000000000-1891010000000000000000000-1891010000000000000000000-1891010000000000000000000-1891010000000000000000000-1891010000000000000000000-1891010000000000000000000-1891010000000000000000000-1891010000000000000000000-1891010000000000000000000-1891010000000000000000000-1891010000000000000000000-1891010000000000000000000-1891010000000000000000000-1891010000000000000000000-1891010000000000000000000-1891010000000000000000000-1891010000000000000000000-1891010000000000000000000-1891010000000000000000000-1891010000000000000000000-1891010000000000000000000-1891010000000000000000000-1891010000000000000000000-1891010000000000000000000-1891010000000000000000000-1891010000000000000000000-1891010000000000000000000-1891010000000000000000000-1891010000000000000000000-1891010000000000000000000-189
Anatomical LocationNeural (brain)Neural (brain)Neural (brain)Neural (brain)Neural (brain)Neural (brain)Neural (brain)Neural (brain)Neural (brain)Neural (brain)Neural (brain)Neural (brain)Neural (brain)Neural (brain)Neural (brain)Neural (brain)Neural (brain)Neural (brain)Neural (brain)Neural (brain)Neural (brain)Neural (brain)Neural (brain)Neural (brain)Neural (brain)Neural (brain)Neural (brain)Neural (brain)Neural (brain)Neural (brain)Neural (brain)Neural (brain)Neural (brain)Neural (brain)Neural (brain)Neural (brain)Neural (brain)Neural (brain)Neural (brain)Neural (brain)Neural (brain)Neural (brain)Neural (brain)Neural (brain)Neural (brain)Neural (brain)Neural (brain)Neural (brain)Neural (brain)Neural (brain)Neural (brain)Neural (brain)Neural (brain)Neural (brain)Neural (brain)Neural (brain)Neural (brain)Neural (brain)Neural (brain)Neural (brain)Neural (brain)Neural (brain)Neural (brain)Eye, retinaNeural (brain)Neural (brain)Neural (brain)Neural (brain)Neural (brain)Neural (brain)Neural (brain)Neural (brain)Neural (brain)Neural (brain)Neural (brain)Neural (brain)Neural (brain)Neural (brain)Neural (brain)Neural (brain)Neural (brain)Neural (brain)Neural (brain)Neural (brain)Neural (brain)Neural (brain)Neural (brain)Neural (brain)
Marker Molecule:namealpha Synuclein (Non-A beta component of AD amyloid, Non-A4 component of amyloid precursor, NACP, SNCA, PARK1)Nectin-2 (Herpes virus entry mediator B, Herpesvirus entry mediator B, HveB, Poliovirus receptor-related protein 2, CD112, PVRL2, HVEB, PRR2)Signal transducer CD24 (Small cell lung carcinoma cluster 4 antigen, CD24, CD24A)CD81 antigen (26 kDa cell surface protein TAPA-1, Target of the antiproliferative antibody 1, Tetraspanin-28, Tspan-28, CD81,TAPA1, TSPAN28)Thy-1 membrane glycoprotein (CDw90, Thy-1 antigen, CD90)Hepatocyte nuclear factor 3-beta (HNF-3-beta, HNF-3B Forkhead box protein A2, Transcription factor 3B, TCF-3B, FOXA2, HNF3B, TCF3B)Protein jagged-1 (Jagged1, hJ1, CD339, JAG1, JAGL1)Metabotropic glutamate receptor (mGluR1, GRM1, GPRC1A, MGLUR1)Cadherin-2 (CDw325, Neural cadherin, N-cadherin, CD325, CDH2, CDHN, NCAD)Neuropilin-2 (Vascular endothelial cell growth factor 165 receptor 2, NRP2, VEGF165R2)Nicastrin (NCSTN, KIAA0253)Multidrug resistance protein 1(ATP-binding cassette sub-family B member 1, P-glycoprotein, CD243, ABCB1, MDR1, PGY1)Dynactin subunit 1(150 kDa dynein-associated polypeptide, DAP-150, DP-150, p135, p150-glued, DCTN1)Serotonin Receptor 5-HT 2BRSurvival motor neuron protein (Component of gems 1, Gemin-1, SMN1, SMN, SMNT, SMN2, SMNC)Synapsin-1 (Brain protein 4.1, Synapsin I, SYN1)SynaptotagminSyntaxin-2 (Epimorphin, STX2, EPIM, STX2A, STX2B, STX2C)Syntaxin-1B (Syntaxin-1B1, Syntaxin-1B2, STX-1B, STX-1B1, STX-1B2)Syntaxin-3 (STX3, STX3A)Syntaxin-1A (Neuron-specific antigen HPC-1, STX1, STX1A)Microtubule-associated protein tau (Neurofibrillary tangle protein, Paired helical filament-tau, PHF-tau, MAPT, MAPTL, MTBT1, TAU)BDNF/NT-3 growth factors receptor (GP145-TrkB, Trk-B, Neurotrophic tyrosine kinase receptor type 2, TrkB tyrosine kinase, Tropomyosin-related kinase B, NTRK2, TRKB)Glutamate decarboxylase 2 (65 kDa glutamic acid decarboxylase, GAD-65, Glutamate decarboxylase 65 kDa isoform, GAD2, GAD65)Neuromodulin (Axonal membrane protein GAP-43, Growth-associated protein 43, Neural phosphoprotein B-50, pp46, GAP43)Glutamate receptor ionotropic, delta-2 (GluR delta 2, GluD2, GluR delta-2 subunit, GRID2, GLURD2)Glutamate receptor 2 (GluR-2, AMPA-selective glutamate receptor 2, GluR-B, GluR-K2, Glutamate receptor ionotropic, AMPA 2, Gl, GRIA2, GLUR2)Neuronal acetylcholine receptor subunit alpha-9Acetylcholinesterase (AChE)Choline O-acetyltransferaseHigh affinity choline transporter 1 (CHT)Vesicular Acetylcholine Transporter (VAChT)Hexaribonucleotide binding protein 3 (HRNBP3, NeuN)Neurofilament light polypeptide (NF-L)Neurofilament medium polypeptide (NF-M)Glutamate decarboxylase 1 (GAD)Tyrosine 3-monooxygenase (TH)Disks large homolog 4 (Postsynaptic density protein 95, PSD-95)Synaptophysin (Major synaptic vesicle protein p38, SYP)Vesicle-associated membrane protein 1 (VAMP-1, Synaptobrevin-1)Neurofilament light polypeptide (NF-L)Neurofilament medium polypeptide (NF-M)Nuclear receptor subfamily 4 group A member 2 (Nurr1, NGFI-B beta, NR4A2)Paired box protein Pax-2 (Pax2)Paired box protein Pax-6 (Pax6, Aniridia type II protein, Oculorhombin)Disks large homolog 4 (Postsynaptic density protein 95, PSD-95)Synaptophysin (Major synaptic vesicle protein p38, SYP)Tyrosine 3-monooxygenase (TH)Vesicle-associated membrane protein 1 (VAMP-1, Synaptobrevin-1)Synaptic vesicular amine transporter (VMAT2, Monoamine transporter, Vesicular amine transporter 2, VAT2)Excitatory amino acid transporter 3 (Excitatory amino-acid carrier 1, EAAT3)Excitatory amino acid transporter 3 (Excitatory amino-acid carrier 1, EAAT3)Protein phosphatase 1 regulatory subunit 1B (DARPP-32)gamma-aminobutyric acid (GABA)Sodium- and chloride-dependent GABA transporter 1 (GAT-1)Sodium- and chloride-dependent GABA transporter 2 (GAT-2, Solute carrier family 6 member 13)Sodium- and chloride-dependent GABA transporter 3 (GAT-3, Solute carrier family 6 member 11)Glutamate decarboxylase 1 (67 kDa glutamic acid decarboxylase, GAD-67)Vesicular inhibitory amino acid transporter (GABA and glycine transporter)Glutaminase kidney isoform, mitochondrial (GLS, K-glutaminase, L-glutamine amidohydrolase, GLS, GLS1, KIAA0838)Excitatory amino acid transporter 3 (Excitatory amino-acid carrier 1, EAAT3)Excitatory amino acid transporter 3 (Excitatory amino-acid carrier 1, EAAT3)Excitatory amino acid transporter 4 (Sodium-dependent glutamate/aspartate transporter, EAAT4)Excitatory amino acid transporter 5 (Retinal glutamate transporter, EAAT5)GlutamineGlutamine Synthetase (GS, Glutamate decarboxylase, Glutamate-ammonia ligase)Vesicular glutamate transporter 1 (VGluT1, Brain-specific Na(+)-dependent inorganic phosphate cotransporter)Vesicular glutamate transporter 2 (VGluT2, Differentiation-associated BNPI)Vesicular glutamate transporter 3 (VGluT3)Choline O-acetyltransferaseInsulin gene enhancer protein ISL-1 (Islet-1)Insulin gene enhancer protein ISL-2 (Islet-2)LIM/homeobox protein Lhx3 (LIM homeobox protein 3)Single-minded homolog 1 (bHLHe14, sim1)Visual system homeobox 2 (chx10)Homeobox protein engrailed-1 (En1)Homeobox even-skipped homolog protein 1 (evx1)Homeobox even-skipped homolog protein 2 (evx2)fibroblast growth factor-1 (FGF-1)Homeobox protein Nkx-6.1 (Homeobox protein NK-6 homolog A)Tumor necrosis factor receptor superfamily member 16 Low affinity neurotrophin receptor p75NTR, NGF receptor, CD271)Neurofilament heavy polypeptide (NF-H, 200 kDa neurofilament protein)Gem-associated protein 2 (Gemin-2, SMN-interacting protein 1)Motor neuron and pancreas homeobox protein 1 (Homeobox protein HB9)DL-5-hydroxytryptophan (oxitriptan)Sodium-dependent serotonin transporter (Serotonin transporter, 5HT transporter)5-hydroxytryptamine (Serotonin)Tryptophan 5-hydroxylase 2
Marker Molecule:typeProteinProteinProteinProteinProteinProteinProteinProteinProteinProteinProteinProteinProteinProteinProteinProteinProteinProteinProteinProteinProteinProteinProteinProteinProteinProteinProteinProteinProteinProteinProteinProteinProteinProteinProteinProteinProteinProteinProteinProteinProteinProteinProteinProteinProteinProteinProteinProteinProteinProteinProteinProteinProteinAmino acidProteinProteinProteinProteinProteinProteinProteinProteinProteinProteinAmino acidProteinProteinProteinProteinProteinProteinProteinProteinProteinProteinProteinProteinProteinProteinProteinProteinProteinProteinProteinAmino acidProteinMonoamine neurotransmitterProtein
Marker Molecule:categoryCD moleculeCD moleculeCD moleculeCD moleculeTranscription factorCD moleculeCD moleculeSkeletalSkeletalNeuronal transmitterNeuronal transmitterCytoskeletalCytoskeletalCytoskeletalCytoskeletalTranscription factorTranscription factorTranscription factorNeuronal transporterNeuronal transporterNeuronal transporterNeuronal transporterNeuronal transporterNeuronal transporterNeuronal transporterNeuronal transporterTranscription factorTranscription factorTranscription factorTranscription factorTranscription factorTranscription factorTranscription factorCD moleculeSkeletal
Subcellular LocalizationCytosol, Nucleus, Plasma membranePlasma membranePlasma membranePlasma membranePlasma membraneCytosol, NucleusPlasma membranePlasma membranePlasma membranePlasma membranePlasma membranePlasma membraneCytosolPlasma membraneCytosol, NucleusPlasma membraneCytosol, Plasma membranePlasma membranePlasma membranePlasma membranePlasma membraneCytosolPlasma membraneCytosolPlasma membranePlasma membranePlasma membraneCytosolCytosolCytosolPlasma membraneCytosolNucleusCytosolCytosolCytosolCytosolPlasma membraneCytosolCytosol, Plasma membraneCytosolCytosolNucleusNucleusNucleusPlasma membraneCytosol, Plasma membrane, SecretedCytosolCytosol, Plasma membraneCytosol, Plasma membrane, SecretedPlasma membrane (dendrites and axon-terminals)Plasma membrane (dendrites and axon-terminals)CytosolCytosolPlasma membranePlasma membranePlasma membraneCytosolCytosolCytosol, MitochondriaPlasma membrane (dendrites and axon-terminals)Plasma membrane (dendrites and axon-terminals)Plasma membrane (dendrites and axon-terminals)Plasma membraneCytosolCytosol, MitochondriaCytosol, Plasma membraneCytosol, Plasma membraneCytosol, Plasma membraneCytosolNucleusNucleusNucleusNucleusNucleusNucleusNucleusNucleusCytosolNucleusPlasma membraneCytosolCytosol, Gemini of coiled bodiesNucleusCytosolPlasma membraneCytosolCytosol
Uniprot IdP37840Q92692 P25063P60033P04216Q9Y261P78504Q13255P19022O60462Q92542P08183Q14203Q16637P17600P32856P61266Q13277Q16623P10636 Q16620Q05329 P17677 O43424P42262Q9UGM1P22303P28329Q9GZV3Q16572Q4G0H5P07196P07197Q99259P07101P78352P08247P23763P07196P07197P43354Q02962P26367P78352P08247P07101P23763Q05940P43005P43005Q9UD71P30531Q9NSD5P48066Q99259Q9H598O94925P43005P43005P48664O00341P15104Q9P2U7Q9P2U8Q8NDX2P28329P61371Q96A47Q9UBR4P81133P58304Q05925P49640Q03828P05230P78426P08138P12036O14893P50219P31645Q8IWU9
Gene Id
Source OrganismHumanHumanHumanHumanHumanHumanHumanHumanHumanHumanHumanHumanHumanHumanHumanHumanHumanHumanHumanHumanHumanHumanHumanHumanHumanHumanHumanHumanHumanHumanHumanHumanHumanHumanHumanHumanHumanHumanHumanHumanHumanHumanHumanHumanHumanHumanHumanHumanHumanHumanHumanHumanHumanHumanHumanHumanHumanHumanHumanHumanHumanHumanHumanHumanHumanHumanHumanHumanHumanHumanHumanHumanHumanHumanHumanHumanHumanHumanHumanHumanHumanHumanHumanHumanHumanHumanHumanHuman
Referencehttps://www.biolegend.com/cell_markershttps://www.biolegend.com/cell_markershttps://www.biolegend.com/cell_markershttps://www.biolegend.com/cell_markersPMID:24489542https://www.ncbi.nlm.nih.gov/gene/2891http://www.abcam.com/neuroscience/cholinergic-neuron-markers-and-their-functionsPMID:27036311PMID:27036311https://www.rndsystems.com/pathways/neural-stem-cell-differentiation-pathways-lineage-specific-markershttps://www.rndsystems.com/pathways/neural-stem-cell-differentiation-pathways-lineage-specific-markershttps://www.rndsystems.com/pathways/neural-stem-cell-differentiation-pathways-lineage-specific-markershttps://www.rndsystems.com/pathways/neural-stem-cell-differentiation-pathways-lineage-specific-markershttps://www.rndsystems.com/pathways/neural-stem-cell-differentiation-pathways-lineage-specific-markershttps://www.rndsystems.com/pathways/neural-stem-cell-differentiation-pathways-lineage-specific-markershttps://www.rndsystems.com/pathways/neural-stem-cell-differentiation-pathways-lineage-specific-markershttps://www.rndsystems.com/products/human-mouse-dopaminergic-neuron-differentiation-kit_sc001bhttps://www.rndsystems.com/pathways/neural-stem-cell-differentiation-pathways-lineage-specific-markershttps://www.rndsystems.com/pathways/neural-stem-cells-lineage-specific-markersPMID:2253986PMID:25033183https://www.rndsystems.com/pathways/neural-stem-cell-differentiation-pathways-lineage-specific-markershttp://www.abcam.com/gaba-transporter-1-gat-1-antibody-epr12998-ab177483.htmlhttps://www.rndsystems.com/pathways/neural-stem-cell-differentiation-pathways-lineage-specific-markershttp://www.abcam.com/neuroscience/glutamatergic-neuron-markers-and-their-functionsPMID:2253986PMID:25033183PMID:7891138http://www.abcam.com/neuroscience/glutamatergic-neuron-markers-and-their-functionshttp://www.abcam.com/neuroscience/glutamatergic-neuron-markers-and-their-functionsPMID:15969621PMID:10952312https://www.rndsystems.com/pathways/neural-stem-cell-differentiation-pathways-lineage-specific-markersPMID:10952312PMID:15917474PMID:15917474PMID:15917474PMID:15917474PMID:24622388http://www.abcam.com/neuroscience/serotonergic-neuron-markers-and-their-functions