SHOGoiN Cell ID: 1010201000000000000000-213

SHOGoiN Cell Taxonomy

Homo sapiens & Mus musculus cell

No.Germ LayerDifferentiation StateSource AgeAnatomy IdCell Type IdAnatomy:body PartAnatomy:organAnatomy:sub-organAnatomy:tissue 1Anatomy:tissue 2Anatomy:tissue 3Anatomy:tissue 4Anatomy:tissue 5-1Anatomy:tissue 5-2Anatomy:tissue 5-3Anatomy:tissue 5-4Cell TypeSynonymCL IdUBERON IdImage IdTissue Image ID
12:Ectodermal4:Terminally differentiated7:Postnatal 8:Neonatal 9:Infant 10:Juvenile 11:Adult1010201000000000000000213HeadBrainCerebrumCerebral cortexRadial glial cellCL:0000681

SHOGoiN Cell Transcriptome

Expression Profile

GSM1617398

GSM1617399

GSM1617400

GSM1617401

GSM1617402

GSM1617403

GSM1617404

GSM1617405

GSM1617406

SHOGoiN Cell Id1010201000000000000000-2131010201000000000000000-2131010201000000000000000-2131010201000000000000000-2131010201000000000000000-2131010201000000000000000-2131010201000000000000000-2131010201000000000000000-2131010201000000000000000-213
Project NameSequence Read ArchiveSequence Read ArchiveSequence Read ArchiveSequence Read ArchiveSequence Read ArchiveSequence Read ArchiveSequence Read ArchiveSequence Read ArchiveSequence Read Archive
Project IdSRP055440SRP055440SRP055440SRP055440SRP055440SRP055440SRP055440SRP055440SRP055440
Assay IdSRP055440_T1SRP055440_T2SRP055440_T3SRP055440_T4SRP055440_T5SRP055440_T6SRP055440_T7SRP055440_T8SRP055440_T9
Project:project TitleSingle Cell Analysis Reveals Unexpected Transcriptional Heterogeneity of Neural Progenitors in the Developing Human CortexSingle Cell Analysis Reveals Unexpected Transcriptional Heterogeneity of Neural Progenitors in the Developing Human CortexSingle Cell Analysis Reveals Unexpected Transcriptional Heterogeneity of Neural Progenitors in the Developing Human CortexSingle Cell Analysis Reveals Unexpected Transcriptional Heterogeneity of Neural Progenitors in the Developing Human CortexSingle Cell Analysis Reveals Unexpected Transcriptional Heterogeneity of Neural Progenitors in the Developing Human CortexSingle Cell Analysis Reveals Unexpected Transcriptional Heterogeneity of Neural Progenitors in the Developing Human CortexSingle Cell Analysis Reveals Unexpected Transcriptional Heterogeneity of Neural Progenitors in the Developing Human CortexSingle Cell Analysis Reveals Unexpected Transcriptional Heterogeneity of Neural Progenitors in the Developing Human CortexSingle Cell Analysis Reveals Unexpected Transcriptional Heterogeneity of Neural Progenitors in the Developing Human Cortex
Project:project Descriptionhttp://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE66217http://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE66217http://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE66217http://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE66217http://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE66217http://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE66217http://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE66217http://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE66217http://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE66217
Project:project Submission Date
Project:organization NameBoston Children's HospitalBoston Children's HospitalBoston Children's HospitalBoston Children's HospitalBoston Children's HospitalBoston Children's HospitalBoston Children's HospitalBoston Children's HospitalBoston Children's Hospital
Project:stable Contact InformationMatthew Bonser Johnson, matthew.johnson@childrens.harvard.eduMatthew Bonser Johnson, matthew.johnson@childrens.harvard.eduMatthew Bonser Johnson, matthew.johnson@childrens.harvard.eduMatthew Bonser Johnson, matthew.johnson@childrens.harvard.eduMatthew Bonser Johnson, matthew.johnson@childrens.harvard.eduMatthew Bonser Johnson, matthew.johnson@childrens.harvard.eduMatthew Bonser Johnson, matthew.johnson@childrens.harvard.eduMatthew Bonser Johnson, matthew.johnson@childrens.harvard.eduMatthew Bonser Johnson, matthew.johnson@childrens.harvard.edu
Project:reference Submission StatusPublishedPublishedPublishedPublishedPublishedPublishedPublishedPublishedPublished
Project:reference AuthorsJohnson MB, Wang PP, Atabay KD, Murphy EA et al.Johnson MB, Wang PP, Atabay KD, Murphy EA et al.Johnson MB, Wang PP, Atabay KD, Murphy EA et al.Johnson MB, Wang PP, Atabay KD, Murphy EA et al.Johnson MB, Wang PP, Atabay KD, Murphy EA et al.Johnson MB, Wang PP, Atabay KD, Murphy EA et al.Johnson MB, Wang PP, Atabay KD, Murphy EA et al.Johnson MB, Wang PP, Atabay KD, Murphy EA et al.Johnson MB, Wang PP, Atabay KD, Murphy EA et al.
Project:reference TitleSingle-cell analysis reveals transcriptional heterogeneity of neural progenitors in human cortex.Single-cell analysis reveals transcriptional heterogeneity of neural progenitors in human cortex.Single-cell analysis reveals transcriptional heterogeneity of neural progenitors in human cortex.Single-cell analysis reveals transcriptional heterogeneity of neural progenitors in human cortex.Single-cell analysis reveals transcriptional heterogeneity of neural progenitors in human cortex.Single-cell analysis reveals transcriptional heterogeneity of neural progenitors in human cortex.Single-cell analysis reveals transcriptional heterogeneity of neural progenitors in human cortex.Single-cell analysis reveals transcriptional heterogeneity of neural progenitors in human cortex.Single-cell analysis reveals transcriptional heterogeneity of neural progenitors in human cortex.
Project:reference Pubmed Id257344912573449125734491257344912573449125734491257344912573449125734491
Assay:assay TypeTranscriptomeTranscriptomeTranscriptomeTranscriptomeTranscriptomeTranscriptomeTranscriptomeTranscriptomeTranscriptome
Assay:assay Factor1010201000000000000000-2131010201000000000000000-2131010201000000000000000-2131010201000000000000000-2131010201000000000000000-2131010201000000000000000-2131010201000000000000000-2131010201000000000000000-2131010201000000000000000-213
Source Cell:sample IdGSM1617398GSM1617399GSM1617400GSM1617401GSM1617402GSM1617403GSM1617404GSM1617405GSM1617406
Source Cell:SHOGoiN Cell Id1010201000000000000000-2131010201000000000000000-2131010201000000000000000-2131010201000000000000000-2131010201000000000000000-2131010201000000000000000-2131010201000000000000000-2131010201000000000000000-2131010201000000000000000-213
Source Cell:source Cell TypeRadial glia cell (Cerebral cortex)Radial glia cell (Cerebral cortex)Radial glia cell (Cerebral cortex)Radial glia cell (Cerebral cortex)Radial glia cell (Cerebral cortex)Radial glia cell (Cerebral cortex)Radial glia cell (Cerebral cortex)Radial glia cell (Cerebral cortex)Radial glia cell (Cerebral cortex)
Source Cell:source OrganismHumanHumanHumanHumanHumanHumanHumanHumanHuman
Source Cell:race Or Strain
Source Cell:age Or Stage
Source Cell:source Tissue Or OrganBrainBrainBrainBrainBrainBrainBrainBrainBrain
Source Cell:source Cell Karyotype
Source Cell:cell Lineage
Source Cell:organism Genetic Information
Source Cell:health Status
Source Cell:source Provider
Technology:assay TechnologyRNA-seqRNA-seqRNA-seqRNA-seqRNA-seqRNA-seqRNA-seqRNA-seqRNA-seq
Technology:assay Detection InstrumentationHiSeq 2000HiSeq 2000HiSeq 2000HiSeq 2000HiSeq 2000HiSeq 2000HiSeq 2000HiSeq 2000HiSeq 2000
Technology:assay Detection Instrument VendorIlluminaIlluminaIlluminaIlluminaIlluminaIlluminaIlluminaIlluminaIllumina
Technology:assessed Material
Technology:source Cell Format
Technology:source Cell Preparation MethodSingle cellSingle cellSingle cellSingle cellSingle cellSingle cellSingle cellSingle cellSingle cell
Technology:source Cell Identidication Method
Technology:source Cell Treatment
Data:data IdSRR1813952SRR1813953SRR1813954SRR1813955SRR1813956SRR1813957SRR1813958SRR1813959SRR1813960
Data:data TypeSequenceSequenceSequenceSequenceSequenceSequenceSequenceSequenceSequence
Data:data Processing Method
Data:data Processing Software And Version
Data:data Normalization Method
Data:data Normalization Software Name And Version
Data:data Analytical Software And Version
Data:reference Sequence Source
Data:genome Annotation Ref