SHOGoiN Cell ID: 1010202030000000000000-189

SHOGoiN Cell Taxonomy

Homo sapiens & Mus musculus cell

No.Germ LayerDifferentiation StateSource AgeAnatomy IdCell Type IdAnatomy:body PartAnatomy:organAnatomy:sub-organAnatomy:tissue 1Anatomy:tissue 2Anatomy:tissue 3Anatomy:tissue 4Anatomy:tissue 5-1Anatomy:tissue 5-2Anatomy:tissue 5-3Anatomy:tissue 5-4Cell TypeSynonymCL IdUBERON IdImage IdTissue Image ID
12:Ectodermal4:Terminally differentiated7:Postnatal 8:Neonatal 9:Infant 10:Juvenile 11:Adult1010202030000000000000189HeadBrainCerebrumHippocampal formationHippocampusNeuronCL:0000540UBERON:0002421

SHOGoiN Cell Transcriptome

Expression Profile

GSM1268913

GSM1268914

GSM1268916

GSM1268918

GSM1268919

GSM1268920

GSM1268921

GSM1268925

GSM1268926

GSM1268927

GSM1268928

GSM1268929

GSM1268932

GSM1268933

GSM1268934

SHOGoiN Cell Id1010202030000000000000-1891010202030000000000000-1891010202030000000000000-1891010202030000000000000-1891010202030000000000000-1891010202030000000000000-1891010202030000000000000-1891010202030000000000000-1891010202030000000000000-1891010202030000000000000-1891010202030000000000000-1891010202030000000000000-1891010202030000000000000-1891010202030000000000000-1891010202030000000000000-189
Project NameSequence Read ArchiveSequence Read ArchiveSequence Read ArchiveSequence Read ArchiveSequence Read ArchiveSequence Read ArchiveSequence Read ArchiveSequence Read ArchiveSequence Read ArchiveSequence Read ArchiveSequence Read ArchiveSequence Read ArchiveSequence Read ArchiveSequence Read ArchiveSequence Read Archive
Project IdSRP033139SRP033139SRP033139SRP033139SRP033139SRP033139SRP033139SRP033139SRP033139SRP033139SRP033139SRP033139SRP033139SRP033139SRP033139
Assay IdSRP033139_T8SRP033139_T9SRP033139_T10SRP033139_T11SRP033139_T12SRP033139_T13SRP033139_T14SRP033139_T15SRP033139_T16SRP033139_T17SRP033139_T18SRP033139_T19SRP033139_T22SRP033139_T23SRP033139_T24
Project:project TitleTranscriptome In Vivo Analysis (TIVA) of spatially defined single cells in intact live mouse and human brain tissueTranscriptome In Vivo Analysis (TIVA) of spatially defined single cells in intact live mouse and human brain tissueTranscriptome In Vivo Analysis (TIVA) of spatially defined single cells in intact live mouse and human brain tissueTranscriptome In Vivo Analysis (TIVA) of spatially defined single cells in intact live mouse and human brain tissueTranscriptome In Vivo Analysis (TIVA) of spatially defined single cells in intact live mouse and human brain tissueTranscriptome In Vivo Analysis (TIVA) of spatially defined single cells in intact live mouse and human brain tissueTranscriptome In Vivo Analysis (TIVA) of spatially defined single cells in intact live mouse and human brain tissueTranscriptome In Vivo Analysis (TIVA) of spatially defined single cells in intact live mouse and human brain tissueTranscriptome In Vivo Analysis (TIVA) of spatially defined single cells in intact live mouse and human brain tissueTranscriptome In Vivo Analysis (TIVA) of spatially defined single cells in intact live mouse and human brain tissueTranscriptome In Vivo Analysis (TIVA) of spatially defined single cells in intact live mouse and human brain tissueTranscriptome In Vivo Analysis (TIVA) of spatially defined single cells in intact live mouse and human brain tissueTranscriptome In Vivo Analysis (TIVA) of spatially defined single cells in intact live mouse and human brain tissueTranscriptome In Vivo Analysis (TIVA) of spatially defined single cells in intact live mouse and human brain tissueTranscriptome In Vivo Analysis (TIVA) of spatially defined single cells in intact live mouse and human brain tissue
Project:project Descriptionhttp://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE52525http://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE52525http://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE52525http://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE52525http://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE52525http://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE52525http://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE52525http://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE52525http://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE52525http://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE52525http://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE52525http://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE52525http://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE52525http://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE52525http://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE52525
Project:project Submission Date12-Jan-1412-Jan-1412-Jan-1412-Jan-1412-Jan-1412-Jan-1412-Jan-1412-Jan-1412-Jan-1412-Jan-1412-Jan-1412-Jan-1412-Jan-1412-Jan-1412-Jan-14
Project:organization NameUniversity of PennsylvaniaUniversity of PennsylvaniaUniversity of PennsylvaniaUniversity of PennsylvaniaUniversity of PennsylvaniaUniversity of PennsylvaniaUniversity of PennsylvaniaUniversity of PennsylvaniaUniversity of PennsylvaniaUniversity of PennsylvaniaUniversity of PennsylvaniaUniversity of PennsylvaniaUniversity of PennsylvaniaUniversity of PennsylvaniaUniversity of Pennsylvania
Project:stable Contact InformationJunhyong KimJunhyong KimJunhyong KimJunhyong KimJunhyong KimJunhyong KimJunhyong KimJunhyong KimJunhyong KimJunhyong KimJunhyong KimJunhyong KimJunhyong KimJunhyong KimJunhyong Kim
Project:reference Submission StatusPublishedPublishedPublishedPublishedPublishedPublishedPublishedPublishedPublishedPublishedPublishedPublishedPublishedPublishedPublished
Project:reference AuthorsLovatt D, Ruble BK, Lee J, Dueck H et al.Lovatt D, Ruble BK, Lee J, Dueck H et al.Lovatt D, Ruble BK, Lee J, Dueck H et al.Lovatt D, Ruble BK, Lee J, Dueck H et al.Lovatt D, Ruble BK, Lee J, Dueck H et al.Lovatt D, Ruble BK, Lee J, Dueck H et al.Lovatt D, Ruble BK, Lee J, Dueck H et al.Lovatt D, Ruble BK, Lee J, Dueck H et al.Lovatt D, Ruble BK, Lee J, Dueck H et al.Lovatt D, Ruble BK, Lee J, Dueck H et al.Lovatt D, Ruble BK, Lee J, Dueck H et al.Lovatt D, Ruble BK, Lee J, Dueck H et al.Lovatt D, Ruble BK, Lee J, Dueck H et al.Lovatt D, Ruble BK, Lee J, Dueck H et al.Lovatt D, Ruble BK, Lee J, Dueck H et al.
Project:reference TitleTranscriptome in vivo analysis (TIVA) of spatially defined single cells in live tissue.Transcriptome in vivo analysis (TIVA) of spatially defined single cells in live tissue.Transcriptome in vivo analysis (TIVA) of spatially defined single cells in live tissue.Transcriptome in vivo analysis (TIVA) of spatially defined single cells in live tissue.Transcriptome in vivo analysis (TIVA) of spatially defined single cells in live tissue.Transcriptome in vivo analysis (TIVA) of spatially defined single cells in live tissue.Transcriptome in vivo analysis (TIVA) of spatially defined single cells in live tissue.Transcriptome in vivo analysis (TIVA) of spatially defined single cells in live tissue.Transcriptome in vivo analysis (TIVA) of spatially defined single cells in live tissue.Transcriptome in vivo analysis (TIVA) of spatially defined single cells in live tissue.Transcriptome in vivo analysis (TIVA) of spatially defined single cells in live tissue.Transcriptome in vivo analysis (TIVA) of spatially defined single cells in live tissue.Transcriptome in vivo analysis (TIVA) of spatially defined single cells in live tissue.Transcriptome in vivo analysis (TIVA) of spatially defined single cells in live tissue.Transcriptome in vivo analysis (TIVA) of spatially defined single cells in live tissue.
Project:reference Pubmed Id244129762441297624412976244129762441297624412976244129762441297624412976244129762441297624412976244129762441297624412976
Assay:assay TypeTranscriptomeTranscriptomeTranscriptomeTranscriptomeTranscriptomeTranscriptomeTranscriptomeTranscriptomeTranscriptomeTranscriptomeTranscriptomeTranscriptomeTranscriptomeTranscriptomeTranscriptome
Assay:assay Factor1010202030000000000000-1891010202030000000000000-1891010202030000000000000-1891010202030000000000000-1891010202030000000000000-1891010202030000000000000-1891010202030000000000000-1891010202030000000000000-1891010202030000000000000-1891010202030000000000000-1891010202030000000000000-1891010202030000000000000-1891010202030000000000000-1891010202030000000000000-1891010202030000000000000-189
Source Cell:sample IdGSM1268913GSM1268914GSM1268916GSM1268918GSM1268919GSM1268920GSM1268921GSM1268925GSM1268926GSM1268927GSM1268928GSM1268929GSM1268932GSM1268933GSM1268934
Source Cell:SHOGoiN Cell Id1010202030000000000000-1891010202030000000000000-1891010202030000000000000-1891010202030000000000000-1891010202030000000000000-1891010202030000000000000-1891010202030000000000000-1891010202030000000000000-1891010202030000000000000-1891010202030000000000000-1891010202030000000000000-1891010202030000000000000-1891010202030000000000000-1891010202030000000000000-1891010202030000000000000-189
Source Cell:source Cell TypeNeuron (Hippocampus)Neuron (Hippocampus)Neuron (Hippocampus)Neuron (Hippocampus)Neuron (Hippocampus)Neuron (Hippocampus)Neuron (Hippocampus)Neuron (Hippocampus)Neuron (Hippocampus)Neuron (Hippocampus)Neuron (Hippocampus)Neuron (Hippocampus)Neuron (Hippocampus)Neuron (Hippocampus)Neuron (Hippocampus)
Source Cell:source OrganismMouseMouseMouseMouseMouseMouseMouseMouseMouseMouseMouseMouseMouseMouseMouse
Source Cell:race Or StrainC57BL/6C57BL/6C57BL/6C57BL/6C57BL/6C57BL/6C57BL/6C57BL/6C57BL/6C57BL/6C57BL/6C57BL/6C57BL/6C57BL/6C57BL/6
Source Cell:age Or StageP4 or 14P4 or 14P4 or 14P4 or 14P4 or 14P4 or 14P4 or 14P4 or 14P4 or 14P4 or 14P4 or 14P4 or 14P4 or 14P4 or 14P4 or 14
Source Cell:source Tissue Or OrganBrainBrainBrainBrainBrainBrainBrainBrainBrainBrainBrainBrainBrainBrainBrain
Source Cell:source Cell Karyotype
Source Cell:cell Lineage
Source Cell:organism Genetic Information
Source Cell:health Status
Source Cell:source Provider
Technology:assay TechnologyRNA-seqRNA-seqRNA-seqRNA-seqRNA-seqRNA-seqRNA-seqRNA-seqRNA-seqRNA-seqRNA-seqRNA-seqRNA-seqRNA-seqRNA-seq
Technology:assay Detection InstrumentationHiSeq 2000HiSeq 2000HiSeq 2000HiSeq 2000HiSeq 2000HiSeq 2000HiSeq 2000HiSeq 2000HiSeq 2000HiSeq 2000HiSeq 2000HiSeq 2000HiSeq 2500HiSeq 2500HiSeq 2500
Technology:assay Detection Instrument VendorIlluminaIlluminaIlluminaIlluminaIlluminaIlluminaIlluminaIlluminaIlluminaIlluminaIlluminaIlluminaIlluminaIlluminaIllumina
Technology:assessed MaterialpolyA RNApolyA RNApolyA RNApolyA RNApolyA RNApolyA RNApolyA RNApolyA RNApolyA RNApolyA RNApolyA RNApolyA RNApolyA RNApolyA RNApolyA RNA
Technology:source Cell Format
Technology:source Cell Preparation MethodSingle cell, primary culturedSingle cell, primary culturedSingle cell, primary culturedSingle cell, primary culturedSingle cell, primary culturedSingle cell, primary culturedSingle cell, primary culturedSingle cell, dissociatedSingle cell, dissociatedSingle cell, dissociatedSingle cell, dissociatedSingle cell, dissociatedSingle cell, dissociatedSingle cell, dissociatedSingle cell, dissociated
Technology:source Cell Identidication Method
Technology:source Cell Treatment
Data:data IdSRR1033326SRR1033327SRR1033328SRR1033329SRR1033330SRR1033331SRR1033332SRR1033336SRR1033337SRR1033338SRR1033339SRR1033340SRR1033343SRR1033344SRR1033345
Data:data TypeSequenceSequenceSequenceSequenceSequenceSequenceSequenceSequenceSequenceSequenceSequenceSequenceSequenceSequenceSequence
Data:data Processing Method
Data:data Processing Software And Version
Data:data Normalization Method
Data:data Normalization Software Name And Version
Data:data Analytical Software And VersionIllumina Casava 1.8.1 and 1.8.2 softwareIllumina Casava 1.8.1 and 1.8.2 softwareIllumina Casava 1.8.1 and 1.8.2 softwareIllumina Casava 1.8.1 and 1.8.2 softwareIllumina Casava 1.8.1 and 1.8.2 softwareIllumina Casava 1.8.1 and 1.8.2 softwareIllumina Casava 1.8.1 and 1.8.2 softwareIllumina Casava 1.8.1 and 1.8.2 softwareIllumina Casava 1.8.1 and 1.8.2 softwareIllumina Casava 1.8.1 and 1.8.2 softwareIllumina Casava 1.8.1 and 1.8.2 softwareIllumina Casava 1.8.1 and 1.8.2 softwareIllumina Casava 1.8.1 and 1.8.2 softwareIllumina Casava 1.8.1 and 1.8.2 softwareIllumina Casava 1.8.1 and 1.8.2 software
Data:reference Sequence Sourcemm9mm9mm9mm9mm9mm9mm9mm9mm9mm9mm9mm9mm9mm9mm9
Data:genome Annotation Ref