SHOGoiN Cell ID: 3100500-144

SHOGoiN Cell Taxonomy

Homo sapiens & Mus musculus cell

No.Germ LayerDifferentiation StateSource AgeAnatomy IdCell Type IdAnatomy:level 1Anatomy:level 2Anatomy:level 3Anatomy:level 4-1Anatomy:level 4-2Anatomy:level 5-1Anatomy:level 5-2Anatomy:level 5-3Anatomy:level 6Cell TypeSynonymCL IdUBERON IdImage IdTissue Image ID
13:Endodermal4:Terminally differentiated6:Fetus3100500144TrunkLiverHepatic lobuleHepatocyteCL:0000182t071
23:Endodermal4:Terminally differentiated7:Postnatal 8:Neonatal 9:Infant 10:Juvenile 11:Adult3100500144TrunkLiverHepatic lobuleHepatocyteCL:0000182t071

SHOGoiN Cell Methylome

Methylation Profile

GSM1015969

GSM1015970

GSM1015971

GSM1015972

SHOGoiN Cell Id3100500-1443100500-1443100500-1443100500-144
Project NameSequence Read ArchiveSequence Read ArchiveSequence Read ArchiveSequence Read Archive
Project IdSRP016010SRP016010SRP016010SRP016010
Assay IdSRP016010_M1SRP016010_M2SRP016010_M3SRP016010_M4
Project:project TitleSingle-cell DNA methylation analysis of epimutations in mouse liver cells.Single-cell DNA methylation analysis of epimutations in mouse liver cells.Single-cell DNA methylation analysis of epimutations in mouse liver cells.Single-cell DNA methylation analysis of epimutations in mouse liver cells.
Project:project Descriptionhttp://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE41379http://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE41379http://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE41379http://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE41379
Project:project Submission Date14-Oct-1214-Oct-1214-Oct-1214-Oct-12
Project:organization NameMax Planck Institute CologneMax Planck Institute CologneMax Planck Institute CologneMax Planck Institute Cologne
Project:stable Contact InformationKemal Akman, kemal.akman@campus.lmu.deKemal Akman, kemal.akman@campus.lmu.deKemal Akman, kemal.akman@campus.lmu.deKemal Akman, kemal.akman@campus.lmu.de
Project:reference Submission StatusNot publishedNot publishedNot publishedNot published
Project:reference Authors
Project:reference Title
Project:reference Pubmed Id
Assay:assay TypeMethylomeMethylomeMethylomeMethylome
Assay:assay FactorSingle cell or poolSingle cell or poolSingle cell or poolSingle cell or pool
Source Cell:sample IdGSM1015969GSM1015970GSM1015971GSM1015972
Source Cell:SHOGoiN Cell Id3100500-1443100500-1443100500-1443100500-144
Source Cell:source Cell TypeHepatocyteHepatocyteHepatocyteHepatocyte
Source Cell:source OrganismMouseMouseMouseMouse
Source Cell:race Or StrainC57BL/6C57BL/6C57BL/6C57BL/6
Source Cell:age Or Stage
Source Cell:source Tissue Or OrganLiverLiverLiverLiver
Source Cell:source Cell Karyotype
Source Cell:cell Lineage
Source Cell:organism Genetic Information
Source Cell:health Status
Source Cell:source Providor
Technology:assay TechnologyBisulfite-Seq (RRBS)Bisulfite-Seq (RRBS)Bisulfite-Seq (RRBS)Bisulfite-Seq (RRBS)
Technology:assay Detection InstrumentationHiSeq 2000HiSeq 2000HiSeq 2000HiSeq 2000
Technology:assay Detection Instrument VendorIllumina Illumina Illumina Illumina
Technology:assesed MaterialGenomic DNAGenomic DNAGenomic DNAGenomic DNA
Technology:source Cell FormatSingle cell, dissociatedSingle cell, dissociatedSingle cell, dissociatedSingle cell, dissociated
Technology:source Cell Preparation Method
Technology:source Cell Identidication Method
Technology:source Cell Treatment
Data:data IdSRR580569SRR580570SRR580571SRR580572
Data:data TypeSequenceSequenceSequenceSequence
Data:data Processing Method
Data:data Processing Software And Version
Data:data Normalization Method
Data:data Normalization Software Name And Version
Data:data Analytical Software And Version
Data:reference Sequence Sourcemm10mm10mm10mm10
Data:genome Annotation Ref