SHOGoiN Cell ID: 3120102010200000000000-082

SHOGoiN Cell Taxonomy

Homo sapiens & Mus musculus cell

No.Germ LayerDifferentiation StateSource AgeAnatomy IdCell Type IdAnatomy:body PartAnatomy:organAnatomy:sub-organAnatomy:tissue 1Anatomy:tissue 2Anatomy:tissue 3Anatomy:tissue 4Anatomy:tissue 5-1Anatomy:tissue 5-2Anatomy:tissue 5-3Anatomy:tissue 5-4Cell TypeSynonymCL IdUBERON IdImage IdTissue Image ID
13 Endodermal4 Terminally differentiated6 Fetus state 7 Postnatal state 8 Neonatal state 9 Infant state 10 Juvenile 11 Adult3120102010200000000000082TrunkSmall intestineDuodenumMucosaLamina propriaIntestinal glandCrypt base columna (CBC) cellt009

SHOGoiN Cell Transcriptome

Expression Profile

GSM1625890

GSM1625891

GSM1625892

GSM1625893

GSM1684382

GSM1684383

GSM1684384

GSM1684385

GSM1684386

GSM1684387

GSM1684388

GSM1987570

GSM1987571

GSM1987573

GSM1987574

GSM1987575

GSM1987576

GSM1987577

GSM1987578

GSM1987579

GSM1987581

GSM1987582

GSM1987583

GSM1987584

SHOGoiN Cell Id3120102010200000000000-0823120102010200000000000-0823120102010200000000000-0823120102010200000000000-0823120102010200000000000-0823120102010200000000000-0823120102010200000000000-0823120102010200000000000-0823120102010200000000000-0823120102010200000000000-0823120102010200000000000-0823120102010200000000000-0823120102010200000000000-0823120102010200000000000-0823120102010200000000000-0823120102010200000000000-0823120102010200000000000-0823120102010200000000000-0823120102010200000000000-0823120102010200000000000-0823120102010200000000000-0823120102010200000000000-0823120102010200000000000-0823120102010200000000000-082
Project NameSequence Read ArchiveSequence Read ArchiveSequence Read ArchiveSequence Read ArchiveSequence Read ArchiveSequence Read ArchiveSequence Read ArchiveSequence Read ArchiveSequence Read ArchiveSequence Read ArchiveSequence Read ArchiveSequence Read ArchiveSequence Read ArchiveSequence Read ArchiveSequence Read ArchiveSequence Read ArchiveSequence Read ArchiveSequence Read ArchiveSequence Read ArchiveSequence Read ArchiveSequence Read ArchiveSequence Read ArchiveSequence Read ArchiveSequence Read Archive
Project IdSRP048838SRP048838SRP048838SRP048838SRP048838SRP048838SRP048838SRP048838SRP048838SRP048838SRP048838SRP067892SRP067892SRP067892SRP067892SRP067892SRP067892SRP067892SRP067892SRP067892SRP067892SRP067892SRP067892SRP067892
Assay IdSRP048838_T23SRP048838_T24SRP048838_T25SRP048838_T26SRP048838_T28SRP048838_T29SRP048838_T30SRP048838_T31SRP048838_T32SRP048838_T33SRP048838_T34SRP067892_T1SRP067892_T2SRP067892_T3SRP067892_T4SRP067892_T5SRP067892_T6SRP067892_T7SRP067892_T8SRP067892_T9SRP067892_T10SRP067892_T11SRP067892_T12SRP067892_T13
Project:project TitleSingle-Cell mRNA Sequencing Reveals Rare Intestinal Cell TypesSingle-Cell mRNA Sequencing Reveals Rare Intestinal Cell TypesSingle-Cell mRNA Sequencing Reveals Rare Intestinal Cell TypesSingle-Cell mRNA Sequencing Reveals Rare Intestinal Cell TypesSingle-Cell mRNA Sequencing Reveals Rare Intestinal Cell TypesSingle-Cell mRNA Sequencing Reveals Rare Intestinal Cell TypesSingle-Cell mRNA Sequencing Reveals Rare Intestinal Cell TypesSingle-Cell mRNA Sequencing Reveals Rare Intestinal Cell TypesSingle-Cell mRNA Sequencing Reveals Rare Intestinal Cell TypesSingle-Cell mRNA Sequencing Reveals Rare Intestinal Cell TypesSingle-Cell mRNA Sequencing Reveals Rare Intestinal Cell TypesSingle-cell RNA-seq reveals distinct maturation stages of the Paneth cell lineageSingle-cell RNA-seq reveals distinct maturation stages of the Paneth cell lineageSingle-cell RNA-seq reveals distinct maturation stages of the Paneth cell lineageSingle-cell RNA-seq reveals distinct maturation stages of the Paneth cell lineageSingle-cell RNA-seq reveals distinct maturation stages of the Paneth cell lineageSingle-cell RNA-seq reveals distinct maturation stages of the Paneth cell lineageSingle-cell RNA-seq reveals distinct maturation stages of the Paneth cell lineageSingle-cell RNA-seq reveals distinct maturation stages of the Paneth cell lineageSingle-cell RNA-seq reveals distinct maturation stages of the Paneth cell lineageSingle-cell RNA-seq reveals distinct maturation stages of the Paneth cell lineageSingle-cell RNA-seq reveals distinct maturation stages of the Paneth cell lineageSingle-cell RNA-seq reveals distinct maturation stages of the Paneth cell lineageSingle-cell RNA-seq reveals distinct maturation stages of the Paneth cell lineage
Project:project Descriptionhttp://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE62270http://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE62270http://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE62270http://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE62270http://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE62270http://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE62270http://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE62270http://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE62270http://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE62270http://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE62270http://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE62270http://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE76408http://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE76408http://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE76408http://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE76408http://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE76408http://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE76408http://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE76408http://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE76408http://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE76408http://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE76408http://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE76408http://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE76408http://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE76408
Project:project Submission Date10-Oct-1410-Oct-1410-Oct-1410-Oct-1410-Oct-1410-Oct-1410-Oct-1410-Oct-1410-Oct-1410-Oct-1410-Oct-1429-Dec-1529-Dec-1529-Dec-1529-Dec-1529-Dec-1529-Dec-1529-Dec-1529-Dec-1529-Dec-1529-Dec-1529-Dec-1529-Dec-1529-Dec-15
Project:organization NameMax Planck Institute of Immunobiology and EpigeneticsMax Planck Institute of Immunobiology and EpigeneticsMax Planck Institute of Immunobiology and EpigeneticsMax Planck Institute of Immunobiology and EpigeneticsMax Planck Institute of Immunobiology and EpigeneticsMax Planck Institute of Immunobiology and EpigeneticsMax Planck Institute of Immunobiology and EpigeneticsMax Planck Institute of Immunobiology and EpigeneticsMax Planck Institute of Immunobiology and EpigeneticsMax Planck Institute of Immunobiology and EpigeneticsMax Planck Institute of Immunobiology and EpigeneticsHubrecht InstituteHubrecht InstituteHubrecht InstituteHubrecht InstituteHubrecht InstituteHubrecht InstituteHubrecht InstituteHubrecht InstituteHubrecht InstituteHubrecht InstituteHubrecht InstituteHubrecht InstituteHubrecht Institute
Project:stable Contact InformationDominic Gr_n, gruen@ie-freiburg.mpg.deDominic Gr_n, gruen@ie-freiburg.mpg.deDominic Gr_n, gruen@ie-freiburg.mpg.deDominic Gr_n, gruen@ie-freiburg.mpg.deDominic Gr_n, gruen@ie-freiburg.mpg.deDominic Gr_n, gruen@ie-freiburg.mpg.deDominic Gr_n, gruen@ie-freiburg.mpg.deDominic Gr_n, gruen@ie-freiburg.mpg.deDominic Gr_n, gruen@ie-freiburg.mpg.deDominic Gr_n, gruen@ie-freiburg.mpg.deDominic Gr_n, gruen@ie-freiburg.mpg.deKay Wiebrands, k.wiebrands@hubrecht.euKay Wiebrands, k.wiebrands@hubrecht.euKay Wiebrands, k.wiebrands@hubrecht.euKay Wiebrands, k.wiebrands@hubrecht.euKay Wiebrands, k.wiebrands@hubrecht.euKay Wiebrands, k.wiebrands@hubrecht.euKay Wiebrands, k.wiebrands@hubrecht.euKay Wiebrands, k.wiebrands@hubrecht.euKay Wiebrands, k.wiebrands@hubrecht.euKay Wiebrands, k.wiebrands@hubrecht.euKay Wiebrands, k.wiebrands@hubrecht.euKay Wiebrands, k.wiebrands@hubrecht.euKay Wiebrands, k.wiebrands@hubrecht.eu
Project:reference Submission StatusPublishedPublishedPublishedPublishedPublishedPublishedPublishedPublishedPublishedPublishedPublishedPublishedPublishedPublishedPublishedPublishedPublishedPublishedPublishedPublishedPublishedPublishedPublishedPublished
Project:reference AuthorsGr_n D, Lyubimova A, Kester L, Wiebrands K et al.Gr_n D, Lyubimova A, Kester L, Wiebrands K et al.Gr_n D, Lyubimova A, Kester L, Wiebrands K et al.Gr_n D, Lyubimova A, Kester L, Wiebrands K et al.Gr_n D, Lyubimova A, Kester L, Wiebrands K et al.Gr_n D, Lyubimova A, Kester L, Wiebrands K et al.Gr_n D, Lyubimova A, Kester L, Wiebrands K et al.Gr_n D, Lyubimova A, Kester L, Wiebrands K et al.Gr_n D, Lyubimova A, Kester L, Wiebrands K et al.Gr_n D, Lyubimova A, Kester L, Wiebrands K et al.Gr_n D, Lyubimova A, Kester L, Wiebrands K et al.Gr_n D, Muraro MJ, Boisset JC, Wiebrands K et al.Gr_n D, Muraro MJ, Boisset JC, Wiebrands K et al.Gr_n D, Muraro MJ, Boisset JC, Wiebrands K et al.Gr_n D, Muraro MJ, Boisset JC, Wiebrands K et al.Gr_n D, Muraro MJ, Boisset JC, Wiebrands K et al.Gr_n D, Muraro MJ, Boisset JC, Wiebrands K et al.Gr_n D, Muraro MJ, Boisset JC, Wiebrands K et al.Gr_n D, Muraro MJ, Boisset JC, Wiebrands K et al.Gr_n D, Muraro MJ, Boisset JC, Wiebrands K et al.Gr_n D, Muraro MJ, Boisset JC, Wiebrands K et al.Gr_n D, Muraro MJ, Boisset JC, Wiebrands K et al.Gr_n D, Muraro MJ, Boisset JC, Wiebrands K et al.Gr_n D, Muraro MJ, Boisset JC, Wiebrands K et al.
Project:reference TitleSingle-cell messenger RNA sequencing reveals rare intestinal cell types.Single-cell messenger RNA sequencing reveals rare intestinal cell types.Single-cell messenger RNA sequencing reveals rare intestinal cell types.Single-cell messenger RNA sequencing reveals rare intestinal cell types.Single-cell messenger RNA sequencing reveals rare intestinal cell types.Single-cell messenger RNA sequencing reveals rare intestinal cell types.Single-cell messenger RNA sequencing reveals rare intestinal cell types.Single-cell messenger RNA sequencing reveals rare intestinal cell types.Single-cell messenger RNA sequencing reveals rare intestinal cell types.Single-cell messenger RNA sequencing reveals rare intestinal cell types.Single-cell messenger RNA sequencing reveals rare intestinal cell types.De Novo Prediction of Stem Cell Identity using Single-Cell Transcriptome Data.De Novo Prediction of Stem Cell Identity using Single-Cell Transcriptome Data.De Novo Prediction of Stem Cell Identity using Single-Cell Transcriptome Data.De Novo Prediction of Stem Cell Identity using Single-Cell Transcriptome Data.De Novo Prediction of Stem Cell Identity using Single-Cell Transcriptome Data.De Novo Prediction of Stem Cell Identity using Single-Cell Transcriptome Data.De Novo Prediction of Stem Cell Identity using Single-Cell Transcriptome Data.De Novo Prediction of Stem Cell Identity using Single-Cell Transcriptome Data.De Novo Prediction of Stem Cell Identity using Single-Cell Transcriptome Data.De Novo Prediction of Stem Cell Identity using Single-Cell Transcriptome Data.De Novo Prediction of Stem Cell Identity using Single-Cell Transcriptome Data.De Novo Prediction of Stem Cell Identity using Single-Cell Transcriptome Data.De Novo Prediction of Stem Cell Identity using Single-Cell Transcriptome Data.
Project:reference Pubmed Id262874672628746726287467262874672628746726287467262874672628746726287467262874672628746727345837273458372734583727345837273458372734583727345837273458372734583727345837273458372734583727345837
Assay:assay TypeTranscriptomeTranscriptomeTranscriptomeTranscriptomeTranscriptomeTranscriptomeTranscriptomeTranscriptomeTranscriptomeTranscriptomeTranscriptomeTranscriptomeTranscriptomeTranscriptomeTranscriptomeTranscriptomeTranscriptomeTranscriptomeTranscriptomeTranscriptomeTranscriptomeTranscriptomeTranscriptomeTranscriptome
Assay:assay Factor3120102010200000000000-0823120102010200000000000-0823120102010200000000000-0823120102010200000000000-0823120102010200000000000-0823120102010200000000000-0823120102010200000000000-0823120102010200000000000-0823120102010200000000000-0823120102010200000000000-0823120102010200000000000-0823120102010200000000000-0823120102010200000000000-0823120102010200000000000-0823120102010200000000000-0823120102010200000000000-0823120102010200000000000-0823120102010200000000000-0823120102010200000000000-0823120102010200000000000-0823120102010200000000000-0823120102010200000000000-0823120102010200000000000-0823120102010200000000000-082
Source Cell:sample IdGSM1625890GSM1625891GSM1625892GSM1625893GSM1684382GSM1684383GSM1684384GSM1684385GSM1684386GSM1684387GSM1684388GSM1987570GSM1987571GSM1987573GSM1987574GSM1987575GSM1987576GSM1987577GSM1987578GSM1987579GSM1987581GSM1987582GSM1987583GSM1987584
Source Cell:SHOGoiN Cell Id3120102010200000000000-0823120102010200000000000-0823120102010200000000000-0823120102010200000000000-0823120102010200000000000-0823120102010200000000000-0823120102010200000000000-0823120102010200000000000-0823120102010200000000000-0823120102010200000000000-0823120102010200000000000-0823120102010200000000000-0823120102010200000000000-0823120102010200000000000-0823120102010200000000000-0823120102010200000000000-0823120102010200000000000-0823120102010200000000000-0823120102010200000000000-0823120102010200000000000-0823120102010200000000000-0823120102010200000000000-0823120102010200000000000-0823120102010200000000000-082
Source Cell:source Cell TypeLgr5-positive intestinal cell (CBC cell) (Intestinal gland)Lgr5-positive intestinal cell (CBC cell) (Intestinal gland)Lgr5-positive intestinal cell (CBC cell) (Intestinal gland)Lgr5-positive intestinal cell (CBC cell) (Intestinal gland)Lgr5-positive intestinal cell (CBC cell) (Intestinal gland)Lgr5-positive intestinal cell (CBC cell) (Intestinal gland)Lgr5-positive intestinal cell (CBC cell) (Intestinal gland)Lgr5-positive intestinal cell (CBC cell) (Intestinal gland)Lgr5-positive intestinal cell (CBC cell) (Intestinal gland)Lgr5-positive intestinal cell (CBC cell) (Intestinal gland)Lgr5-positive intestinal cell (CBC cell) (Intestinal gland)Lgr5-positive intestinal cell (CBC cell)Lgr5-positive intestinal cell (CBC cell)Lgr5-positive intestinal cell (CBC cell)Lgr5-positive intestinal cell (CBC cell)Lgr5-positive intestinal cell (CBC cell)Lgr5-positive intestinal cell (CBC cell), CD24+ fraction3 week CD24+ cellLgr5-positive intestinal cell (CBC cell), CD24+ fractionLgr5-positive intestinal cell (CBC cell)Lgr5-positive intestinal cell (CBC cell), CD24+ fractionLgr5-positive intestinal cell (CBC cell), CD24+ fraction8 week CD24+ cell8 week CD24+ cell
Source Cell:source OrganismMouseMouseMouseMouseMouseMouseMouseMouseMouseMouseMouseMouseMouseMouseMouseMouseMouseMouseMouseMouseMouseMouseMouseMouse
Source Cell:race Or StrainC57BL/6C57BL/6C57BL/6C57BL/6C57BL/6C57BL/6C57BL/6C57BL/6C57BL/6C57BL/6C57BL/6Lgr5-CreERT2 C57BL6/JLgr5-CreERT2 C57BL6/JLgr5-CreERT2 C57BL6/JLgr5-CreERT2 C57BL6/JLgr5-CreERT2 C57BL6/JLgr5-CreERT2 C57BL6/JLgr5-CreERT2 C57BL6/JLgr5-CreERT2 C57BL6/JLgr5-CreERT2 C57BL6/JLgr5-CreERT2 C57BL6/JLgr5-CreERT2 C57BL6/JLgr5-CreERT2 C57BL6/JLgr5-CreERT2 C57BL6/J
Source Cell:age Or Stage3 mo3 mo3 mo3 mo3 mo3 mo3 mo3 mo3 mo3 mo3 mo3 mo3 mo
Source Cell:source Tissue Or OrganSmall intestineSmall intestineSmall intestineSmall intestineSmall intestineSmall intestineSmall intestineSmall intestineSmall intestineSmall intestineSmall intestineSmall intestineSmall intestineSmall intestineSmall intestineSmall intestineSmall intestineSmall intestineSmall intestineSmall intestineSmall intestineSmall intestineSmall intestineSmall intestine
Source Cell:source Cell Karyotype
Source Cell:cell Lineage
Source Cell:organism Genetic Informationgenotype/variation: Lgr5-GFP-DTRgenotype/variation: Lgr5-GFP-DTRgenotype/variation: Lgr5-GFP-DTRgenotype/variation: Lgr5-GFP-DTRgenotype/variation: Lgr5-EGFPgenotype/variation: Lgr5-EGFPgenotype/variation: Lgr5-YFPgenotype/variation: Lgr5-YFPgenotype/variation: Lgr5-YFPgenotype/variation: Lgr5-YFPgenotype/variation: Lgr5-YFP
Source Cell:health StatusTamoxifen injection (0.4mg), 5 day tracedTamoxifen injection (0.4mg), 5 day tracedTamoxifen injection (0.4mg), 5 day tracedTamoxifen injection (0.4mg), 5 day tracedTamoxifen injection (0.4mg), 5 day tracedTamoxifen injection (0.4mg), 3 week tracedTamoxifen injection (0.4mg), non-tracedTamoxifen injection (0.4mg), 8 week tracedTamoxifen injection (0.4mg), 8 week tracedTamoxifen injection (0.4mg), 8 week tracedTamoxifen injection (0.4mg), 8 week tracedTamoxifen injection (0.4mg), non-tracedTamoxifen injection (0.4mg), non-traced
Source Cell:source Provider
Technology:assay TechnologyRNA-SeqRNA-SeqRNA-SeqRNA-SeqRNA-SeqRNA-SeqRNA-SeqRNA-SeqRNA-SeqRNA-SeqRNA-SeqRNA-SeqRNA-SeqRNA-SeqRNA-SeqRNA-SeqRNA-SeqRNA-SeqRNA-SeqRNA-SeqRNA-SeqRNA-SeqRNA-SeqRNA-Seq
Technology:assay Detection InstrumentationHiSeq 2500HiSeq 2500HiSeq 2500HiSeq 2500NextSeq 500NextSeq 500HiSeq 2500HiSeq 2500HiSeq 2500HiSeq 2500HiSeq 2500HiSeq 2500HiSeq 2500HiSeq 2500HiSeq 2500HiSeq 2500NextSeq 500NextSeq 500NextSeq 500NextSeq 500NextSeq 500NextSeq 500NextSeq 500NextSeq 500
Technology:assay Detection Instrument VendorIlluminaIlluminaIlluminaIlluminaIlluminaIlluminaIlluminaIlluminaIlluminaIlluminaIlluminaIlluminaIlluminaIlluminaIlluminaIlluminaIlluminaIlluminaIlluminaIlluminaIlluminaIlluminaIlluminaIllumina
Technology:assessed MaterialTotal RNATotal RNATotal RNATotal RNATotal RNATotal RNATotal RNATotal RNATotal RNATotal RNATotal RNATotal RNATotal RNATotal RNATotal RNATotal RNATotal RNATotal RNATotal RNATotal RNATotal RNATotal RNATotal RNATotal RNA
Technology:source Cell Format
Technology:source Cell Preparation MethodSingle cell, dissociatedSingle cell, dissociatedSingle cell, dissociatedSingle cell, dissociatedSingle cellSingle cellSingle cellSingle cellSingle cellSingle cellSingle cellSingle cellSingle cellSingle cellSingle cellSingle cellSingle cell
Technology:source Cell Identidication Method
Technology:source Cell Treatment
Data:data IdSRR1841716SRR1841717SRR1841718SRR1841719SRR2021284SRR2021285SRR2021286SRR2021287SRR2021288SRR2021289SRR2021290SRR3063721SRR3063722SRR3063723SRR3063724SRR3063725SRR3063726SRR3063727SRR3063728SRR3063729SRR3063730SRR3063731SRR3063732SRR3063733
Data:data TypeSequenceSequenceSequenceSequenceSequenceSequenceSequenceSequenceSequenceSequenceSequenceSequenceSequenceSequenceSequenceSequenceSequenceSequenceSequenceSequenceSequenceSequenceSequenceSequence
Data:data Processing Method
Data:data Processing Software And Version
Data:data Normalization Method
Data:data Normalization Software Name And Version
Data:data Analytical Software And Version
Data:reference Sequence Sourcemm10mm10mm10mm10mm10mm10mm10mm10mm10mm10mm10mm10mm10mm10mm10mm10mm10mm10mm10mm10mm10mm10mm10mm10
Data:genome Annotation Ref