SHOGoiN Cell ID: 3150201000000000000000-189

SHOGoiN Cell Taxonomy

Homo sapiens & Mus musculus cell

No.Germ LayerDifferentiation StateSource AgeAnatomy IdCell Type IdAnatomy:body PartAnatomy:organAnatomy:sub-organAnatomy:tissue 1Anatomy:tissue 2Anatomy:tissue 3Anatomy:tissue 4Anatomy:tissue 5-1Anatomy:tissue 5-2Anatomy:tissue 5-3Anatomy:tissue 5-4Cell TypeSynonymCL IdUBERON IdImage IdTissue Image ID
12 Ecotodermal4 Terminally differentiated6 Fetus state 7 Postnatal state 8 Neonatal state 9 Infant state 10 Juvenile 11 Adult3150201000000000000000189TrunkSpinal cordDorsal root of spinal cordDorsal root ganglionNeuron

SHOGoiN Cell Methylome

Methylation Profile

GSM2026493

GSM2026494

GSM2026495

GSM2026496

GSM2026497

GSM2026498

GSM2026499

GSM2026500

GSM2026501

GSM2026502

GSM2026503

GSM2026504

GSM2026505

GSM2026506

GSM2026507

SHOGoiN Cell Id3150201000000000000000-1893150201000000000000000-1893150201000000000000000-1893150201000000000000000-1893150201000000000000000-1893150201000000000000000-1893150201000000000000000-1893150201000000000000000-1893150201000000000000000-1893150201000000000000000-1893150201000000000000000-1893150201000000000000000-1893150201000000000000000-1893150201000000000000000-1893150201000000000000000-189
Project NameSequence Read ArchiveSequence Read ArchiveSequence Read ArchiveSequence Read ArchiveSequence Read ArchiveSequence Read ArchiveSequence Read ArchiveSequence Read ArchiveSequence Read ArchiveSequence Read ArchiveSequence Read ArchiveSequence Read ArchiveSequence Read ArchiveSequence Read ArchiveSequence Read Archive
Project IdSRP068012SRP068012SRP068012SRP068012SRP068012SRP068012SRP068012SRP068012SRP068012SRP068012SRP068012SRP068012SRP068012SRP068012SRP068012
Assay IdSRP068012_M1SRP068012_M2SRP068012_M3SRP068012_M4SRP068012_M5SRP068012_M6SRP068012_M7SRP068012_M8SRP068012_M9SRP068012_M10SRP068012_M11SRP068012_M12SRP068012_M13SRP068012_M14SRP068012_M15
Project:project TitleSimultaneous profiling of transcriptome and DNA methylome from a single cellSimultaneous profiling of transcriptome and DNA methylome from a single cellSimultaneous profiling of transcriptome and DNA methylome from a single cellSimultaneous profiling of transcriptome and DNA methylome from a single cellSimultaneous profiling of transcriptome and DNA methylome from a single cellSimultaneous profiling of transcriptome and DNA methylome from a single cellSimultaneous profiling of transcriptome and DNA methylome from a single cellSimultaneous profiling of transcriptome and DNA methylome from a single cellSimultaneous profiling of transcriptome and DNA methylome from a single cellSimultaneous profiling of transcriptome and DNA methylome from a single cellSimultaneous profiling of transcriptome and DNA methylome from a single cellSimultaneous profiling of transcriptome and DNA methylome from a single cellSimultaneous profiling of transcriptome and DNA methylome from a single cellSimultaneous profiling of transcriptome and DNA methylome from a single cellSimultaneous profiling of transcriptome and DNA methylome from a single cell
Project:project Descriptionhttps://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE76483https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE76483https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE76483https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE76483https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE76483https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE76483https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE76483https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE76483https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE76483https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE76483https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE76483https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE76483https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE76483https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE76483https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE76483
Project:project Submission Date04-Jan-1604-Jan-1604-Jan-1604-Jan-1604-Jan-1604-Jan-1604-Jan-1604-Jan-1604-Jan-1604-Jan-1604-Jan-1604-Jan-1604-Jan-1604-Jan-1604-Jan-16
Project:organization NameUCLAUCLAUCLAUCLAUCLAUCLAUCLAUCLAUCLAUCLAUCLAUCLAUCLAUCLAUCLA
Project:stable Contact InformationQin An, anqin314@gmail.comQin An, anqin314@gmail.comQin An, anqin314@gmail.comQin An, anqin314@gmail.comQin An, anqin314@gmail.comQin An, anqin314@gmail.comQin An, anqin314@gmail.comQin An, anqin314@gmail.comQin An, anqin314@gmail.comQin An, anqin314@gmail.comQin An, anqin314@gmail.comQin An, anqin314@gmail.comQin An, anqin314@gmail.comQin An, anqin314@gmail.comQin An, anqin314@gmail.com
Project:reference Submission StatusPublishedPublishedPublishedPublishedPublishedPublishedPublishedPublishedPublishedPublishedPublishedPublishedPublishedPublishedPublished
Project:reference AuthorsHu Y, Huang K, An Q, Du G et al.Hu Y, Huang K, An Q, Du G et al.Hu Y, Huang K, An Q, Du G et al.Hu Y, Huang K, An Q, Du G et al.Hu Y, Huang K, An Q, Du G et al.Hu Y, Huang K, An Q, Du G et al.Hu Y, Huang K, An Q, Du G et al.Hu Y, Huang K, An Q, Du G et al.Hu Y, Huang K, An Q, Du G et al.Hu Y, Huang K, An Q, Du G et al.Hu Y, Huang K, An Q, Du G et al.Hu Y, Huang K, An Q, Du G et al.Hu Y, Huang K, An Q, Du G et al.Hu Y, Huang K, An Q, Du G et al.Hu Y, Huang K, An Q, Du G et al.
Project:reference TitleSimultaneous profiling of transcriptome and DNA methylome from a single cell.Simultaneous profiling of transcriptome and DNA methylome from a single cell.Simultaneous profiling of transcriptome and DNA methylome from a single cell.Simultaneous profiling of transcriptome and DNA methylome from a single cell.Simultaneous profiling of transcriptome and DNA methylome from a single cell.Simultaneous profiling of transcriptome and DNA methylome from a single cell.Simultaneous profiling of transcriptome and DNA methylome from a single cell.Simultaneous profiling of transcriptome and DNA methylome from a single cell.Simultaneous profiling of transcriptome and DNA methylome from a single cell.Simultaneous profiling of transcriptome and DNA methylome from a single cell.Simultaneous profiling of transcriptome and DNA methylome from a single cell.Simultaneous profiling of transcriptome and DNA methylome from a single cell.Simultaneous profiling of transcriptome and DNA methylome from a single cell.Simultaneous profiling of transcriptome and DNA methylome from a single cell.Simultaneous profiling of transcriptome and DNA methylome from a single cell.
Project:reference Pubmed Id271503612715036127150361271503612715036127150361271503612715036127150361271503612715036127150361271503612715036127150361
Assay:assay TypeMethylomeMethylomeMethylomeMethylomeMethylomeMethylomeMethylomeMethylomeMethylomeMethylomeMethylomeMethylomeMethylomeMethylomeMethylome
Assay:assay Factor
Source Cell:sample IdGSM2026493GSM2026494GSM2026495GSM2026496GSM2026497GSM2026498GSM2026499GSM2026500GSM2026501GSM2026502GSM2026503GSM2026504GSM2026505GSM2026506GSM2026507
Source Cell:SHOGoiN Cell Id3150201000000000000000-1893150201000000000000000-1893150201000000000000000-1893150201000000000000000-1893150201000000000000000-1893150201000000000000000-1893150201000000000000000-1893150201000000000000000-1893150201000000000000000-1893150201000000000000000-1893150201000000000000000-1893150201000000000000000-1893150201000000000000000-1893150201000000000000000-1893150201000000000000000-189
Source Cell:source Cell TypeNeuron (Dorsal root ganglion)Neuron (Dorsal root ganglion)Neuron (Dorsal root ganglion)Neuron (Dorsal root ganglion)Neuron (Dorsal root ganglion)Neuron (Dorsal root ganglion)Neuron (Dorsal root ganglion)Neuron (Dorsal root ganglion)Neuron (Dorsal root ganglion)Neuron (Dorsal root ganglion)Neuron (Dorsal root ganglion)Neuron (Dorsal root ganglion)Neuron (Dorsal root ganglion)Neuron (Dorsal root ganglion)Neuron (Dorsal root ganglion)
Source Cell:source OrganismMouseMouseMouseMouseMouseMouseMouseMouseMouseMouseMouseMouseMouseMouseMouse
Source Cell:race Or StrainB6D2F1B6D2F1B6D2F1B6D2F1B6D2F1B6D2F1B6D2F1B6D2F1B6D2F1B6D2F1B6D2F1B6D2F1B6D2F1B6D2F1B6D2F1
Source Cell:age Or Stage
Source Cell:source Tissue Or OrganSpinal cordSpinal cordSpinal cordSpinal cordSpinal cordSpinal cordSpinal cordSpinal cordSpinal cordSpinal cordSpinal cordSpinal cordSpinal cordSpinal cordSpinal cord
Source Cell:source Cell Karyotype
Source Cell:cell Lineage
Source Cell:organism Genetic Information
Source Cell:health Status
Source Cell:source Providor
Technology:assay TechnologyBisulfite-Seq (RRBS)Bisulfite-Seq (RRBS)Bisulfite-Seq (RRBS)Bisulfite-Seq (RRBS)Bisulfite-Seq (RRBS)Bisulfite-Seq (RRBS)Bisulfite-Seq (RRBS)Bisulfite-Seq (RRBS)Bisulfite-Seq (RRBS)Bisulfite-Seq (RRBS)Bisulfite-Seq (RRBS)Bisulfite-Seq (RRBS)Bisulfite-Seq (RRBS)Bisulfite-Seq (RRBS)Bisulfite-Seq (RRBS)
Technology:assay Detection InstrumentationHiSeq 2000HiSeq 2000HiSeq 2000HiSeq 2000HiSeq 2000HiSeq 2000HiSeq 2000HiSeq 2000HiSeq 2000HiSeq 2000HiSeq 2000HiSeq 2000HiSeq 2000HiSeq 2000HiSeq 2000
Technology:assay Detection Instrument VendorIlluminaIlluminaIlluminaIlluminaIlluminaIlluminaIlluminaIlluminaIlluminaIlluminaIlluminaIlluminaIlluminaIlluminaIllumina
Technology:assesed MaterialGenomic DNAGenomic DNAGenomic DNAGenomic DNAGenomic DNAGenomic DNAGenomic DNAGenomic DNAGenomic DNAGenomic DNAGenomic DNAGenomic DNAGenomic DNAGenomic DNAGenomic DNA
Technology:source Cell FormatSingle cellSingle cellSingle cellSingle cellSingle cellSingle cellSingle cellSingle cellSingle cellSingle cellSingle cellSingle cellSingle cellSingle cellSingle cell
Technology:source Cell Preparation Method
Technology:source Cell Identidication Method
Technology:source Cell Treatment
Data:data IdSRR3309834SRR3309835SRR3309836SRR3309837SRR3309838SRR3309839SRR3309840SRR3309841SRR3309842SRR3309843SRR3309844SRR3309845SRR3309846SRR3309847SRR3309848
Data:data TypeSequenceSequenceSequenceSequenceSequenceSequenceSequenceSequenceSequenceSequenceSequenceSequenceSequenceSequenceSequence
Data:data Processing Method
Data:data Processing Software And Version
Data:data Normalization Method
Data:data Normalization Software Name And Version
Data:data Analytical Software And Version
Data:reference Sequence Sourcemm10mm10mm10mm10mm10mm10mm10mm10mm10mm10mm10mm10mm10mm10mm10
Data:genome Annotation Ref