SHOGoiN Cell ID: 5030203000000000000000-761

SHOGoiN Cell Taxonomy

Homo sapiens & Mus musculus cell

No.Germ LayerDifferentiation StateSource AgeAnatomy IdCell Type IdAnatomy:body PartAnatomy:organAnatomy:sub-organAnatomy:tissue 1Anatomy:tissue 2Anatomy:tissue 3Anatomy:tissue 4Anatomy:tissue 5-1Anatomy:tissue 5-2Anatomy:tissue 5-3Anatomy:tissue 5-4Cell TypeSynonymCL IdUBERON IdImage IdTissue Image ID
14 Mesodermal4 Terminally differentiated7 Postnatal state 8 Neonatal state 9 Infant state 10 Juvenile 11 Adult5030203000000000000000761GenitaliaOvaryOvarian cortexMature follicle (Graafian follicle)Secondary oocyteCL:0000655

SHOGoiN Cell Methylome

Methylation Profile

GSM1147592

GSM1147593

GSM1370522

GSM1370523

GSM1370524

GSM1370525

GSM1370526

GSM1370527

GSM1370528

GSM1370529

GSM1370530

GSM1370531

GSM1370532

GSM1370533

GSM1413827

GSM1413828

GSM1849306

GSM1849321

GSM1849322

GSM1849323

GSM2042051

GSM2042052

GSM2042053

GSM2042054

GSM2042055

GSM2042056

SHOGoiN Cell Id5030203000000000000000-7615030203000000000000000-7615030203000000000000000-7615030203000000000000000-7615030203000000000000000-7615030203000000000000000-7615030203000000000000000-7615030203000000000000000-7615030203000000000000000-7615030203000000000000000-7615030203000000000000000-7615030203000000000000000-7615030203000000000000000-7615030203000000000000000-7615030203000000000000000-7615030203000000000000000-7615030203000000000000000-7615030203000000000000000-7615030203000000000000000-7615030203000000000000000-7615030203000000000000000-7615030203000000000000000-7615030203000000000000000-7615030203000000000000000-7615030203000000000000000-7615030203000000000000000-761
Project NameSequence Read ArchiveSequence Read ArchiveSequence Read ArchiveSequence Read ArchiveSequence Read ArchiveSequence Read ArchiveSequence Read ArchiveSequence Read ArchiveSequence Read ArchiveSequence Read ArchiveSequence Read ArchiveSequence Read ArchiveSequence Read ArchiveSequence Read ArchiveSequence Read ArchiveSequence Read ArchiveSequence Read ArchiveSequence Read ArchiveSequence Read ArchiveSequence Read ArchiveSequence Read ArchiveSequence Read ArchiveSequence Read ArchiveSequence Read ArchiveSequence Read ArchiveSequence Read Archive
Project IdSRP023116SRP023116SRP041257SRP041257SRP041257SRP041257SRP041257SRP041257SRP041257SRP041257SRP041257SRP041257SRP041257SRP041257SRP041257SRP041257SRP062328SRP062328SRP062328SRP062328SRP062328SRP062328SRP062328SRP062328SRP062328SRP062328
Assay IdSRP023116_M9SRP023116_M10SRP041257_M1SRP041257_M2SRP041257_M3SRP041257_M4SRP041257_M5SRP041257_M6SRP041257_M7SRP041257_M8SRP041257_M9SRP041257_M10SRP041257_M11SRP041257_M12SRP041257_M45SRP041257_M46SRP062328_M2SRP062328_M17SRP062328_M18SRP062328_M19SRP062328_M24SRP062328_M25SRP062328_M26SRP062328_M27SRP062328_M28SRP062328_M29
Project:project TitleSingle cell methylome landscapes of mouse embryonic stem cells and early embryos analyzed by reduced representation bisulfite sequencingSingle cell methylome landscapes of mouse embryonic stem cells and early embryos analyzed by reduced representation bisulfite sequencingSingle-Cell Whole-Genome Bisulfite Sequencing for Analysis of Epigenetic HeterogeneitySingle-Cell Whole-Genome Bisulfite Sequencing for Analysis of Epigenetic HeterogeneitySingle-Cell Whole-Genome Bisulfite Sequencing for Analysis of Epigenetic HeterogeneitySingle-Cell Whole-Genome Bisulfite Sequencing for Analysis of Epigenetic HeterogeneitySingle-Cell Whole-Genome Bisulfite Sequencing for Analysis of Epigenetic HeterogeneitySingle-Cell Whole-Genome Bisulfite Sequencing for Analysis of Epigenetic HeterogeneitySingle-Cell Whole-Genome Bisulfite Sequencing for Analysis of Epigenetic HeterogeneitySingle-Cell Whole-Genome Bisulfite Sequencing for Analysis of Epigenetic HeterogeneitySingle-Cell Whole-Genome Bisulfite Sequencing for Analysis of Epigenetic HeterogeneitySingle-Cell Whole-Genome Bisulfite Sequencing for Analysis of Epigenetic HeterogeneitySingle-Cell Whole-Genome Bisulfite Sequencing for Analysis of Epigenetic HeterogeneitySingle-Cell Whole-Genome Bisulfite Sequencing for Analysis of Epigenetic HeterogeneitySingle-Cell Whole-Genome Bisulfite Sequencing for Analysis of Epigenetic HeterogeneitySingle-Cell Whole-Genome Bisulfite Sequencing for Analysis of Epigenetic HeterogeneityHuman oocyte DNA methylomeHuman oocyte DNA methylomeHuman oocyte DNA methylomeHuman oocyte DNA methylomeHuman oocyte DNA methylomeHuman oocyte DNA methylomeHuman oocyte DNA methylomeHuman oocyte DNA methylomeHuman oocyte DNA methylomeHuman oocyte DNA methylome
Project:project Descriptionhttp://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE47343http://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE47343http://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE56879http://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE56879http://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE56879http://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE56879http://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE56879http://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE56879http://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE56879http://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE56879http://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE56879http://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE56879http://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE56879http://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE56879http://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE56879http://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE56879https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE71985https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE71985https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE71985https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE71985https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE71985https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE71985https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE71985https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE71985https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE71985https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE71985
Project:project Submission Date31-Aug-1331-Aug-1317-Apr-1417-Apr-1417-Apr-1417-Apr-1417-Apr-1417-Apr-1417-Apr-1417-Apr-1417-Apr-1417-Apr-1417-Apr-1417-Apr-1417-Apr-1417-Apr-1412-Aug-1512-Aug-1512-Aug-1512-Aug-1512-Aug-1512-Aug-1512-Aug-1512-Aug-1512-Aug-1512-Aug-15
Project:organization NameBiodynamics Optical Imaging Center, Peking UniversityBiodynamics Optical Imaging Center, Peking UniversityThe Babraham InstituteThe Babraham InstituteThe Babraham InstituteThe Babraham InstituteThe Babraham InstituteThe Babraham InstituteThe Babraham InstituteThe Babraham InstituteThe Babraham InstituteThe Babraham InstituteThe Babraham InstituteThe Babraham InstituteThe Babraham InstituteThe Babraham InstituteAlbert Einstein College of MedicineAlbert Einstein College of MedicineAlbert Einstein College of MedicineAlbert Einstein College of MedicineAlbert Einstein College of MedicineAlbert Einstein College of MedicineAlbert Einstein College of MedicineAlbert Einstein College of MedicineAlbert Einstein College of MedicineAlbert Einstein College of Medicine
Project:stable Contact InformationHongshan Guo, guo-hs@pku.edu.cnHongshan Guo, guo-hs@pku.edu.cnFelix Krueger, felix.krueger@babraham.ac.ukFelix Krueger, felix.krueger@babraham.ac.ukFelix Krueger, felix.krueger@babraham.ac.ukFelix Krueger, felix.krueger@babraham.ac.ukFelix Krueger, felix.krueger@babraham.ac.ukFelix Krueger, felix.krueger@babraham.ac.ukFelix Krueger, felix.krueger@babraham.ac.ukFelix Krueger, felix.krueger@babraham.ac.ukFelix Krueger, felix.krueger@babraham.ac.ukFelix Krueger, felix.krueger@babraham.ac.ukFelix Krueger, felix.krueger@babraham.ac.ukFelix Krueger, felix.krueger@babraham.ac.ukFelix Krueger, felix.krueger@babraham.ac.ukFelix Krueger, felix.krueger@babraham.ac.ukBo Yu, boyumich2@gmail.comBo Yu, boyumich2@gmail.comBo Yu, boyumich2@gmail.comBo Yu, boyumich2@gmail.comBo Yu, boyumich2@gmail.comBo Yu, boyumich2@gmail.comBo Yu, boyumich2@gmail.comBo Yu, boyumich2@gmail.comBo Yu, boyumich2@gmail.comBo Yu, boyumich2@gmail.com
Project:reference Submission StatusPublishedPublishedPublishedPublishedPublishedPublishedPublishedPublishedPublishedPublishedPublishedPublishedPublishedPublishedPublishedPublishedPublishedPublishedPublishedPublishedPublishedPublishedPublishedPublishedPublishedPublished
Project:reference AuthorsGuo H, Zhu P, Tang F, Wu X, Wen L, Li XGuo H, Zhu P, Tang F, Wu X, Wen L, Li XSmallwood SA, Lee HJ, Angermueller C, Krueger F et al.Smallwood SA, Lee HJ, Angermueller C, Krueger F et al.Smallwood SA, Lee HJ, Angermueller C, Krueger F et al.Smallwood SA, Lee HJ, Angermueller C, Krueger F et al.Smallwood SA, Lee HJ, Angermueller C, Krueger F et al.Smallwood SA, Lee HJ, Angermueller C, Krueger F et al.Smallwood SA, Lee HJ, Angermueller C, Krueger F et al.Smallwood SA, Lee HJ, Angermueller C, Krueger F et al.Smallwood SA, Lee HJ, Angermueller C, Krueger F et al.Smallwood SA, Lee HJ, Angermueller C, Krueger F et al.Smallwood SA, Lee HJ, Angermueller C, Krueger F et al.Smallwood SA, Lee HJ, Angermueller C, Krueger F et al.Smallwood SA, Lee HJ, Angermueller C, Krueger F et al.Smallwood SA, Lee HJ, Angermueller C, Krueger F et al.Yu B, Dong X, Gravina S, Kartal _ et al.Yu B, Dong X, Gravina S, Kartal _ et al.Yu B, Dong X, Gravina S, Kartal _ et al.Yu B, Dong X, Gravina S, Kartal _ et al.Yu B, Dong X, Gravina S, Kartal _ et al.Yu B, Dong X, Gravina S, Kartal _ et al.Yu B, Dong X, Gravina S, Kartal _ et al.Yu B, Dong X, Gravina S, Kartal _ et al.Yu B, Dong X, Gravina S, Kartal _ et al.Yu B, Dong X, Gravina S, Kartal _ et al.
Project:reference TitleSingle-cell methylome landscapes of mouse embryonic stem cells and early embryos analyzed using reduced representation bisulfite sequencing.Single-cell methylome landscapes of mouse embryonic stem cells and early embryos analyzed using reduced representation bisulfite sequencing.Single-cell genome-wide bisulfite sequencing for assessing epigenetic heterogeneity.Single-cell genome-wide bisulfite sequencing for assessing epigenetic heterogeneity.Single-cell genome-wide bisulfite sequencing for assessing epigenetic heterogeneity.Single-cell genome-wide bisulfite sequencing for assessing epigenetic heterogeneity.Single-cell genome-wide bisulfite sequencing for assessing epigenetic heterogeneity.Single-cell genome-wide bisulfite sequencing for assessing epigenetic heterogeneity.Single-cell genome-wide bisulfite sequencing for assessing epigenetic heterogeneity.Single-cell genome-wide bisulfite sequencing for assessing epigenetic heterogeneity.Single-cell genome-wide bisulfite sequencing for assessing epigenetic heterogeneity.Single-cell genome-wide bisulfite sequencing for assessing epigenetic heterogeneity.Single-cell genome-wide bisulfite sequencing for assessing epigenetic heterogeneity.Single-cell genome-wide bisulfite sequencing for assessing epigenetic heterogeneity.Single-cell genome-wide bisulfite sequencing for assessing epigenetic heterogeneity.Single-cell genome-wide bisulfite sequencing for assessing epigenetic heterogeneity.Genome-wide, Single-Cell DNA Methylomics Reveals Increased Non-CpG Methylation during Human Oocyte Maturation.Genome-wide, Single-Cell DNA Methylomics Reveals Increased Non-CpG Methylation during Human Oocyte Maturation.Genome-wide, Single-Cell DNA Methylomics Reveals Increased Non-CpG Methylation during Human Oocyte Maturation.Genome-wide, Single-Cell DNA Methylomics Reveals Increased Non-CpG Methylation during Human Oocyte Maturation.Genome-wide, Single-Cell DNA Methylomics Reveals Increased Non-CpG Methylation during Human Oocyte Maturation.Genome-wide, Single-Cell DNA Methylomics Reveals Increased Non-CpG Methylation during Human Oocyte Maturation.Genome-wide, Single-Cell DNA Methylomics Reveals Increased Non-CpG Methylation during Human Oocyte Maturation.Genome-wide, Single-Cell DNA Methylomics Reveals Increased Non-CpG Methylation during Human Oocyte Maturation.Genome-wide, Single-Cell DNA Methylomics Reveals Increased Non-CpG Methylation during Human Oocyte Maturation.Genome-wide, Single-Cell DNA Methylomics Reveals Increased Non-CpG Methylation during Human Oocyte Maturation.
Project:reference Pubmed Id2417914324179143250427862504278625042786250427862504278625042786250427862504278625042786250427862504278625042786250427862504278628648898286488982864889828648898286488982864889828648898286488982864889828648898
Assay:assay TypeMethylomeMethylomeMethylomeMethylomeMethylomeMethylomeMethylomeMethylomeMethylomeMethylomeMethylomeMethylomeMethylomeMethylomeMethylomeMethylomeMethylomeMethylomeMethylomeMethylomeMethylomeMethylomeMethylomeMethylomeMethylomeMethylome
Assay:assay FactorCell typeCell typeCell typeCell typeCell typeCell typeCell typeCell typeCell typeCell typeCell typeCell typeCell typeCell typeCell typeCell typeOocyte maturationOocyte maturationOocyte maturationOocyte maturationOocyte maturationOocyte maturationOocyte maturationOocyte maturationOocyte maturationOocyte maturation
Source Cell:sample IdGSM1147592GSM1147593GSM1370522GSM1370523GSM1370524GSM1370525GSM1370526GSM1370527GSM1370528GSM1370529GSM1370530GSM1370531GSM1370532GSM1370533GSM1413827GSM1413828GSM1849306GSM1849321GSM1849322GSM1849323GSM2042051GSM2042052GSM2042053GSM2042054GSM2042055GSM2042056
Source Cell:SHOGoiN Cell Id5030203000000000000000-7615030203000000000000000-7615030203000000000000000-7615030203000000000000000-7615030203000000000000000-7615030203000000000000000-7615030203000000000000000-7615030203000000000000000-7615030203000000000000000-7615030203000000000000000-7615030203000000000000000-7615030203000000000000000-7615030203000000000000000-7615030203000000000000000-7615030203000000000000000-7615030203000000000000000-7615030203000000000000000-7615030203000000000000000-7615030203000000000000000-7615030203000000000000000-7615030203000000000000000-7615030203000000000000000-7615030203000000000000000-7615030203000000000000000-7615030203000000000000000-7615030203000000000000000-761
Source Cell:source Cell TypeMetaphase II oocyteMetaphase II oocyteSecondary oocyte (Ovarian follicle)Secondary oocyte (Ovarian follicle)Secondary oocyte (Ovarian follicle)Secondary oocyte (Ovarian follicle)Secondary oocyte (Ovarian follicle)Secondary oocyte (Ovarian follicle)Secondary oocyte (Ovarian follicle)Secondary oocyte (Ovarian follicle)Secondary oocyte (Ovarian follicle)Secondary oocyte (Ovarian follicle)Secondary oocyte (Ovarian follicle)Secondary oocyte (Ovarian follicle)Secondary oocyte (Ovarian follicle)Secondary oocyte (Ovarian follicle)Oocyte (mature metaphase (MII) stage )Oocyte (mature metaphase (MII) stage )Oocyte (mature metaphase (MII) stage )Oocyte (mature metaphase (MII) stage )Oocyte (mature metaphase (MII) stage )Oocyte (mature metaphase (MII) stage )Oocyte (mature metaphase (MII) stage )Oocyte (mature metaphase (MII) stage )Oocyte (mature metaphase (MII) stage )Oocyte (mature metaphase (MII) stage )
Source Cell:source OrganismMouseMouseMouseMouseMouseMouseMouseMouseMouseMouseMouseMouseMouseMouseMouseMouseHumanHumanHumanHumanHumanHumanHumanHumanHumanHuman
Source Cell:race Or StrainC57BL/6NC57BL/6NC57BL/6C57BL/6C57BL/6C57BL/6C57BL/6C57BL/6C57BL/6C57BL/6C57BL/6C57BL/6C57BL/6C57BL/6C57BL/6 wild-typeC57BL/6 wild-typeFemaleFemaleFemaleFemaleFemaleFemaleFemaleFemaleFemaleFemale
Source Cell:age Or Stage4_5 week old4_5 week old4_5 week old4_5 week old4_5 week old4_5 week old4_5 week old4_5 week old4_5 week old4_5 week old4_5 week old4_5 week old
Source Cell:source Tissue Or OrganGenitaliaGenitaliaGenitaliaGenitaliaGenitaliaGenitaliaGenitaliaGenitaliaGenitaliaGenitaliaGenitaliaGenitaliaGenitaliaGenitaliaGenitaliaGenitaliaGenitaliaGenitaliaGenitaliaGenitaliaGenitaliaGenitaliaGenitaliaGenitaliaGenitaliaGenitalia
Source Cell:source Cell Karyotype
Source Cell:cell Lineage
Source Cell:organism Genetic Information
Source Cell:health Status
Source Cell:source Providor
Technology:assay TechnologyBisulfite-Seq (RRBS)Bisulfite-Seq (RRBS)Bisulfite-Seq (WGBS)Bisulfite-Seq (WGBS)Bisulfite-Seq (WGBS)Bisulfite-Seq (WGBS)Bisulfite-Seq (WGBS)Bisulfite-Seq (WGBS)Bisulfite-Seq (WGBS)Bisulfite-Seq (WGBS)Bisulfite-Seq (WGBS)Bisulfite-Seq (WGBS)Bisulfite-Seq (WGBS)Bisulfite-Seq (WGBS)Bisulfite-Seq (WGBS, deeper sequencing)Bisulfite-Seq (WGBS, deeper sequencing)Bisulfite-Seq (WGBS)Bisulfite-Seq (WGBS)Bisulfite-Seq (WGBS)Bisulfite-Seq (WGBS)Bisulfite-Seq (WGBS)Bisulfite-Seq (WGBS)Bisulfite-Seq (WGBS)Bisulfite-Seq (WGBS)Bisulfite-Seq (WGBS)Bisulfite-Seq (WGBS)
Technology:assay Detection InstrumentationHiSeq 2000HiSeq 2000HiSeq 2000HiSeq 2000HiSeq 2000HiSeq 2000HiSeq 2000HiSeq 2000HiSeq 2000HiSeq 2000HiSeq 2000HiSeq 2000HiSeq 2000HiSeq 2000HiSeq 2000HiSeq 2000HiSeq 2000HiSeq 2000HiSeq 2000HiSeq 2000HiSeq 2000HiSeq 2000HiSeq 2000HiSeq 2000HiSeq 2000HiSeq 2000
Technology:assay Detection Instrument VendorIlluminaIlluminaIlluminaIlluminaIlluminaIlluminaIlluminaIlluminaIlluminaIlluminaIlluminaIlluminaIlluminaIlluminaIlluminaIlluminaIlluminaIlluminaIlluminaIlluminaIlluminaIlluminaIlluminaIlluminaIlluminaIllumina
Technology:assesed MaterialGenomic DNAGenomic DNAGenomic DNAGenomic DNAGenomic DNAGenomic DNAGenomic DNAGenomic DNAGenomic DNAGenomic DNAGenomic DNAGenomic DNAGenomic DNAGenomic DNAGenomic DNAGenomic DNAGenomic DNAGenomic DNAGenomic DNAGenomic DNAGenomic DNAGenomic DNAGenomic DNAGenomic DNAGenomic DNAGenomic DNA
Technology:source Cell FormatSingle cellSingle cellSingle cell, culturedSingle cell, culturedSingle cell, culturedSingle cell, culturedSingle cell, culturedSingle cell, culturedSingle cell, culturedSingle cell, culturedSingle cell, culturedSingle cell, culturedSingle cell, culturedSingle cell, culturedSingle cellSingle cellSingle cellSingle cellSingle cellSingle cellSingle cellSingle cellSingle cellSingle cellSingle cellSingle cell
Technology:source Cell Preparation Method
Technology:source Cell Identidication Method
Technology:source Cell Treatment
Data:data IdSRR867081SRR867082SRR1248444SRR1248445SRR1248446SRR1248447SRR1248448SRR1248449SRR1248450SRR1248451SRR1248452SRR1248453SRR1248454SRR1248455SRR1411188SRR1411189SRR2156465SRR2156480SRR2156481SRR2156482SRR3106765SRR3106766SRR3106767SRR3106768SRR3106769SRR3106770
Data:data TypeSequenceSequenceSequenceSequenceSequenceSequenceSequenceSequenceSequenceSequenceSequenceSequenceSequenceSequenceSequenceSequenceSequenceSequenceSequenceSequenceSequenceSequenceSequenceSequenceSequenceSequence
Data:data Processing Method
Data:data Processing Software And VersionBismark21 v0.10.1Bismark21 v0.10.1Bismark21 v0.10.1Bismark21 v0.10.1Bismark21 v0.10.1Bismark21 v0.10.1Bismark21 v0.10.1Bismark21 v0.10.1Bismark21 v0.10.1Bismark21 v0.10.1
Data:data Normalization Method
Data:data Normalization Software Name And Version
Data:data Analytical Software And Version
Data:reference Sequence Sourcemm9mm9NCBIM37NCBIM37NCBIM37NCBIM37NCBIM37NCBIM37NCBIM37NCBIM37NCBIM37NCBIM37NCBIM37NCBIM37NCBIM37NCBIM37hg19hg19hg19hg19hg19hg19hg19hg19hg19hg19
Data:genome Annotation Ref