SHOGoiN Cell ID: 5030206000000000000000-755

SHOGoiN Cell Taxonomy

Homo sapiens & Mus musculus cell

No.Germ LayerDifferentiation StateSource AgeAnatomy IdCell Type IdAnatomy:body PartAnatomy:organAnatomy:sub-organAnatomy:tissue 1Anatomy:tissue 2Anatomy:tissue 3Anatomy:tissue 4Anatomy:tissue 5-1Anatomy:tissue 5-2Anatomy:tissue 5-3Anatomy:tissue 5-4Cell TypeSynonymCL IdUBERON IdImage IdTissue Image ID
11:Non-layered3:Multipotent/Progenitor/Precursor6:Fetus ~5030206000000000000000755GenitaliaOvaryOvarian cortexOvarian folliclePrimary oocyteCL:0000654518

SHOGoiN Cell Methylome

Methylation Profile

GSM1849305

GSM1849307

GSM1849310

GSM1849311

GSM1849313

GSM1849314

GSM1849317

GSM2042048

GSM2042049

GSM2042057

SHOGoiN Cell Id5030206000000000000000-7555030206000000000000000-7555030206000000000000000-7555030206000000000000000-7555030206000000000000000-7555030206000000000000000-7555030206000000000000000-7555030206000000000000000-7555030206000000000000000-7555030206000000000000000-755
Project NameSequence Read ArchiveSequence Read ArchiveSequence Read ArchiveSequence Read ArchiveSequence Read ArchiveSequence Read ArchiveSequence Read ArchiveSequence Read ArchiveSequence Read ArchiveSequence Read Archive
Project IdSRP062328SRP062328SRP062328SRP062328SRP062328SRP062328SRP062328SRP062328SRP062328SRP062328
Assay IdSRP062328_M1SRP062328_M3SRP062328_M6SRP062328_M7SRP062328_M9SRP062328_M10SRP062328_M13SRP062328_M21SRP062328_M22SRP062328_M30
Project:project TitleHuman oocyte DNA methylomeHuman oocyte DNA methylomeHuman oocyte DNA methylomeHuman oocyte DNA methylomeHuman oocyte DNA methylomeHuman oocyte DNA methylomeHuman oocyte DNA methylomeHuman oocyte DNA methylomeHuman oocyte DNA methylomeHuman oocyte DNA methylome
Project:project Descriptionhttps://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE71985https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE71985https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE71985https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE71985https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE71985https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE71985https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE71985https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE71985https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE71985https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE71985
Project:project Submission Date12-Aug-1512-Aug-1512-Aug-1512-Aug-1512-Aug-1512-Aug-1512-Aug-1512-Aug-1512-Aug-1512-Aug-15
Project:organization NameAlbert Einstein College of MedicineAlbert Einstein College of MedicineAlbert Einstein College of MedicineAlbert Einstein College of MedicineAlbert Einstein College of MedicineAlbert Einstein College of MedicineAlbert Einstein College of MedicineAlbert Einstein College of MedicineAlbert Einstein College of MedicineAlbert Einstein College of Medicine
Project:stable Contact InformationBo Yu, boyumich2@gmail.comBo Yu, boyumich2@gmail.comBo Yu, boyumich2@gmail.comBo Yu, boyumich2@gmail.comBo Yu, boyumich2@gmail.comBo Yu, boyumich2@gmail.comBo Yu, boyumich2@gmail.comBo Yu, boyumich2@gmail.comBo Yu, boyumich2@gmail.comBo Yu, boyumich2@gmail.com
Project:reference Submission StatusPublishedPublishedPublishedPublishedPublishedPublishedPublishedPublishedPublishedPublished
Project:reference AuthorsYu B, Dong X, Gravina S, Kartal _ et al.Yu B, Dong X, Gravina S, Kartal _ et al.Yu B, Dong X, Gravina S, Kartal _ et al.Yu B, Dong X, Gravina S, Kartal _ et al.Yu B, Dong X, Gravina S, Kartal _ et al.Yu B, Dong X, Gravina S, Kartal _ et al.Yu B, Dong X, Gravina S, Kartal _ et al.Yu B, Dong X, Gravina S, Kartal _ et al.Yu B, Dong X, Gravina S, Kartal _ et al.Yu B, Dong X, Gravina S, Kartal _ et al.
Project:reference TitleGenome-wide, Single-Cell DNA Methylomics Reveals Increased Non-CpG Methylation during Human Oocyte Maturation.Genome-wide, Single-Cell DNA Methylomics Reveals Increased Non-CpG Methylation during Human Oocyte Maturation.Genome-wide, Single-Cell DNA Methylomics Reveals Increased Non-CpG Methylation during Human Oocyte Maturation.Genome-wide, Single-Cell DNA Methylomics Reveals Increased Non-CpG Methylation during Human Oocyte Maturation.Genome-wide, Single-Cell DNA Methylomics Reveals Increased Non-CpG Methylation during Human Oocyte Maturation.Genome-wide, Single-Cell DNA Methylomics Reveals Increased Non-CpG Methylation during Human Oocyte Maturation.Genome-wide, Single-Cell DNA Methylomics Reveals Increased Non-CpG Methylation during Human Oocyte Maturation.Genome-wide, Single-Cell DNA Methylomics Reveals Increased Non-CpG Methylation during Human Oocyte Maturation.Genome-wide, Single-Cell DNA Methylomics Reveals Increased Non-CpG Methylation during Human Oocyte Maturation.Genome-wide, Single-Cell DNA Methylomics Reveals Increased Non-CpG Methylation during Human Oocyte Maturation.
Project:reference Pubmed Id28648898286488982864889828648898286488982864889828648898286488982864889828648898
Assay:assay TypeMethylomeMethylomeMethylomeMethylomeMethylomeMethylomeMethylomeMethylomeMethylomeMethylome
Assay:assay FactorOocyte maturationOocyte maturationOocyte maturationOocyte maturationOocyte maturationOocyte maturationOocyte maturationOocyte maturationOocyte maturationOocyte maturation
Source Cell:sample IdGSM1849305GSM1849307GSM1849310GSM1849311GSM1849313GSM1849314GSM1849317GSM2042048GSM2042049GSM2042057
Source Cell:SHOGoiN Cell Id5030206000000000000000-7555030206000000000000000-7555030206000000000000000-7555030206000000000000000-7555030206000000000000000-7555030206000000000000000-7555030206000000000000000-7555030206000000000000000-7555030206000000000000000-7555030206000000000000000-755
Source Cell:source Cell TypeOocyte (mature metaphase (MI) stage )Oocyte (mature metaphase (MI) stage )Oocyte (mature metaphase (MI) stage )Oocyte (mature metaphase (MI) stage )Oocyte (mature metaphase (MI) stage )Oocyte (mature metaphase (MI) stage )Oocyte (mature metaphase (MI) stage )Oocyte (mature metaphase (MI) stage )Oocyte (mature metaphase (MI) stage )Oocyte (mature metaphase (MI) stage )
Source Cell:source OrganismHumanHumanHumanHumanHumanHumanHumanHumanHumanHuman
Source Cell:race Or StrainFemaleFemaleFemaleFemaleFemaleFemaleFemaleFemaleFemaleFemale
Source Cell:age Or Stage
Source Cell:source Tissue Or OrganGenitaliaGenitaliaGenitaliaGenitaliaGenitaliaGenitaliaGenitaliaGenitaliaGenitaliaGenitalia
Source Cell:source Cell Karyotype
Source Cell:cell Lineage
Source Cell:organism Genetic Information
Source Cell:health Status
Source Cell:source Providor
Technology:assay TechnologyBisulfite-Seq (WGBS)Bisulfite-Seq (WGBS)Bisulfite-Seq (WGBS)Bisulfite-Seq (WGBS)Bisulfite-Seq (WGBS)Bisulfite-Seq (WGBS)Bisulfite-Seq (WGBS)Bisulfite-Seq (WGBS)Bisulfite-Seq (WGBS)Bisulfite-Seq (WGBS)
Technology:assay Detection InstrumentationHiSeq 2000HiSeq 2000HiSeq 2000HiSeq 2000HiSeq 2000HiSeq 2000HiSeq 2000HiSeq 2000HiSeq 2000HiSeq 2000
Technology:assay Detection Instrument VendorIllumina Illumina Illumina Illumina Illumina Illumina Illumina Illumina Illumina Illumina
Technology:assesed MaterialGenomic DNAGenomic DNAGenomic DNAGenomic DNAGenomic DNAGenomic DNAGenomic DNAGenomic DNAGenomic DNAGenomic DNA
Technology:source Cell FormatSingle cellSingle cellSingle cellSingle cellSingle cellSingle cellSingle cellSingle cellSingle cellSingle cell
Technology:source Cell Preparation Method
Technology:source Cell Identidication Method
Technology:source Cell Treatment
Data:data IdSRR2156464SRR2156466SRR2156469SRR2156470SRR2156472SRR2156473SRR2156476SRR3106762SRR3106763SRR3106771
Data:data TypeSequenceSequenceSequenceSequenceSequenceSequenceSequenceSequenceSequenceSequence
Data:data Processing Method
Data:data Processing Software And VersionBismark21 v0.10.1Bismark21 v0.10.1Bismark21 v0.10.1Bismark21 v0.10.1Bismark21 v0.10.1Bismark21 v0.10.1Bismark21 v0.10.1Bismark21 v0.10.1Bismark21 v0.10.1Bismark21 v0.10.1
Data:data Normalization Method
Data:data Normalization Software Name And Version
Data:data Analytical Software And Version
Data:reference Sequence Sourcehg19hg19hg19hg19hg19hg19hg19hg19hg19hg19
Data:genome Annotation Ref

Image

SHOGoiN Cell Id5030206000000000000000-755
Image Id

518

TissueOvary
Cell TypePrimary oocyte
OrganismHuman
Cell Strain
LocationOvary
Karyotype
RaceJapanese
Age41
Sexfemale
Medium
Serum
Other Chemical
Feeder
Other Treatment
Culture Period
Differentiaion
Self Renewal Ability
Onocogenic Transformation
Knock Out Gene
Knock In Gene
DiseaseCervical squamous cell carcinoma
Cod
Shooting Date2011.9.22
Shooting Conditionnormal
Embeddingparaffin
Staininghematoxylin
MicroscopeOLYMPUS BX50
CameraOLYMPUS DP20
Image Size X1600
Image Size Y1200
Resolution72
Magnification400
Contact PersonKoji Yamanegi
Emailyamanegi@hyo-med.ac.jp
Telephone0798-45-6432
Fax0798-45-6431
AffiliationDepartment of clinical pathology, Hyogo collage of medicine
Zip Code663-8501
Address1-1, Mukogawa, Nishinomiya, Hyogo
CountryJapan
Note
Nucleous Area
Nucleous Circularity
Nucleous Bending
Nucleous Convex Area
Nucleous Ellipse Long Axis
Nucleous Inertia
Cell Area
Cell Circularity
Cell Bending
Cell Convex Area
Cell Ellipse Long Axis
Cell Inertia
Cell-nucleous Area Ratio
Cell-nucleous Eccentricity1
Cell-nucleous Eccentricity2
Cell-nucleous Eccentricity3
Cell-nucleous Eccentricity4