SHOGoiN Cell ID: 5030206000000000000000-761

SHOGoiN Cell Taxonomy

Homo sapiens & Mus musculus cell

No.Germ LayerDifferentiation StateSource AgeAnatomy IdCell Type IdAnatomy:body PartAnatomy:organAnatomy:sub-organAnatomy:tissue 1Anatomy:tissue 2Anatomy:tissue 3Anatomy:tissue 4Anatomy:tissue 5-1Anatomy:tissue 5-2Anatomy:tissue 5-3Anatomy:tissue 5-4Cell TypeSynonymCL IdUBERON IdImage IdTissue Image ID
11:Non-layered3:Multipotent/Progenitor/Precursor4:Neurula ~5030206000000000000000761GenitaliaOvaryOvarian cortexOvarian follicleSecondary oocyteCL:0000655

SHOGoiN Cell Transcriptome

Expression Profile

GSM1160112

GSM1160113

GSM1160114

GSM967487

GSM967488

GSM967489

GSM1080195

GSM1080196

SHOGoiN Cell Id5030206000000000000000-7615030206000000000000000-7615030206000000000000000-7615030206000000000000000-7615030206000000000000000-7615030206000000000000000-7615030206000000000000000-7615030206000000000000000-761
Project NameSequence Read ArchiveSequence Read ArchiveSequence Read ArchiveSequence Read ArchiveSequence Read ArchiveSequence Read ArchiveSequence Read ArchiveSequence Read Archive
Project IdSRP018525SRP018525SRP018525SRP014428SRP014428SRP014428SRP018525SRP018525
Assay IdSRP018525_T16SRP018525_T17SRP018525_T18SRP014428_T11SRP014428_T12SRP014428_T13SRP018525_T1SRP018525_T2
Project:project TitleGenetic Programs in Human and Mouse Early Embryos Revealed by Single-Cell RNA-SequencingGenetic Programs in Human and Mouse Early Embryos Revealed by Single-Cell RNA-SequencingGenetic Programs in Human and Mouse Early Embryos Revealed by Single-Cell RNA-SequencingFull-length mRNA-Seq from single-cell levels of RNA and individual circulating tumor cellsFull-length mRNA-Seq from single-cell levels of RNA and individual circulating tumor cellsFull-length mRNA-Seq from single-cell levels of RNA and individual circulating tumor cellsGenetic Programs in Human and Mouse Early Embryos Revealed by Single-Cell RNA-SequencingGenetic Programs in Human and Mouse Early Embryos Revealed by Single-Cell RNA-Sequencing
Project:project Descriptionhttp://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE44183http://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE44183http://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE44183http://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE38495http://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE38495http://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE38495http://www.ncbi.nlm.nih.gov/Traces/sra/?study=SRP018525http://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE44183
Project:project Submission Date19-Jul-1319-Jul-1319-Jul-1322-Jul-1222-Jul-1222-Jul-1219-Jul-1319-Jul-13
Project:organization NameHuman Genetics, UCLAHuman Genetics, UCLAHuman Genetics, UCLAKarolinska InstitutetKarolinska InstitutetKarolinska InstitutetHuman Genetics, UCLAHuman Genetics, UCLA
Project:stable Contact InformationKevin HuangKevin HuangKevin HuangDaniel Ramsk_ld, daniel.ramskold@licr.ki.seDaniel Ramsk_ld, daniel.ramskold@licr.ki.seDaniel Ramsk_ld, daniel.ramskold@licr.ki.seKevin HuangKevin Huang
Project:reference Submission StatusPublishedPublishedPublishedPublishedPublishedPublishedPublishedPublished
Project:reference AuthorsXue Z, Huang K, Cai C, Cai L et al.Xue Z, Huang K, Cai C, Cai L et al.Xue Z, Huang K, Cai C, Cai L et al.Ramsk_ld D, Luo S, Wang YC, Li R et al.Ramsk_ld D, Luo S, Wang YC, Li R et al.Ramsk_ld D, Luo S, Wang YC, Li R et al.Xue Z, Huang K, Cai C, Cai L et al.Xue Z, Huang K, Cai C, Cai L et al.
Project:reference TitleGenetic programs in human and mouse early embryos revealed by single-cell RNA sequencing.Genetic programs in human and mouse early embryos revealed by single-cell RNA sequencing.Genetic programs in human and mouse early embryos revealed by single-cell RNA sequencing.Full-length mRNA-Seq from single-cell levels of RNA and individual circulating tumor cells.Full-length mRNA-Seq from single-cell levels of RNA and individual circulating tumor cells.Full-length mRNA-Seq from single-cell levels of RNA and individual circulating tumor cells.Genetic programs in human and mouse early embryos revealed by single-cell RNA sequencing.Genetic programs in human and mouse early embryos revealed by single-cell RNA sequencing.
Project:reference Pubmed Id2389277823892778238927782282031822820318228203182389277823892778
Assay:assay TypeTranscriptomeTranscriptomeTranscriptomeTranscriptomeTranscriptomeTranscriptomeTranscriptomeTranscriptome
Assay:assay Factor5030206000000000000000-7615030206000000000000000-7615030206000000000000000-7615030206000000000000000-7615030206000000000000000-7615030206000000000000000-7615030206000000000000000-7615030206000000000000000-761
Source Cell:sample IdGSM1160112GSM1160113GSM1160114GSM967487GSM967488GSM967489GSM1080195GSM1080196
Source Cell:SHOGoiN Cell Id5030206000000000000000-7615030206000000000000000-7615030206000000000000000-7615030206000000000000000-7615030206000000000000000-7615030206000000000000000-7615030206000000000000000-7615030206000000000000000-761
Source Cell:source Cell TypeSecondary oocyteSecondary oocyteSecondary oocyteSecondary oocyte (Ovarian follicle)Secondary oocyte (Ovarian follicle)Secondary oocyte (Ovarian follicle)Secondary oocyte (Ovarian follicle)Secondary oocyte (Ovarian follicle)
Source Cell:source OrganismHumanHumanHumanMouseMouseMouseMouseMouse
Source Cell:race Or StrainHan ChinaseHan ChinaseHan ChinaseCAST/EiCAST/EiCAST/EiC57BL/6C57BL/6
Source Cell:age Or Stage
Source Cell:source Tissue Or OrganGenitaliaGenitaliaGenitaliaGenitaliaGenitaliaGenitaliaGenitaliaGenitalia
Source Cell:source Cell Karyotype
Source Cell:cell Lineage
Source Cell:organism Genetic Information
Source Cell:health Status
Source Cell:source Provider
Technology:assay TechnologyRNA-seqRNA-seqRNA-seqRNA-seqRNA-seqRNA-seqRNA-seqRNA-seq
Technology:assay Detection InstrumentationHiSeq 2000HiSeq 2000HiSeq 2000HiSeq 2000HiSeq 2000HiSeq 2000HiSeq 2000HiSeq 2000
Technology:assay Detection Instrument VendorIlluminaIlluminaIlluminaIlluminaIlluminaIlluminaIlluminaIllumina
Technology:assessed MaterialpolyA RNApolyA RNApolyA RNApolyA RNApolyA RNApolyA RNApolyA RNApolyA RNA
Technology:source Cell Format
Technology:source Cell Preparation MethodSingle cell, dissociatedSingle cell, dissociatedSingle cell, dissociatedSingle cell, culturedSingle cell, culturedSingle cell, culturedSingle cell, dissociatedSingle cell, dissociated
Technology:source Cell Identidication Method
Technology:source Cell Treatment
Data:data IdSRR893046SRR893047SRR893048SRR522060SRR522061SRR522062SRR689233SRR689234
Data:data TypeSequenceSequenceSequenceSequenceSequenceSequenceSequenceSequence
Data:data Processing Method
Data:data Processing Software And Version
Data:data Normalization MethodRPKMRPKMRPKMRPKMRPKMRPKMRPKMRPKM
Data:data Normalization Software Name And Version
Data:data Analytical Software And Versionrpkmforgenes.pyrpkmforgenes.pyrpkmforgenes.py
Data:reference Sequence Sourcehg19hg19hg19mm9mm9mm9mm9mm9
Data:genome Annotation Ref