SHOGoiN Cell ID: 5090101000001000000000-236

SHOGoiN Cell Taxonomy

Homo sapiens & Mus musculus cell

No.Germ LayerDifferentiation StateSource AgeAnatomy IdCell Type IdAnatomy:body PartAnatomy:organAnatomy:sub-organAnatomy:tissue 1Anatomy:tissue 2Anatomy:tissue 3Anatomy:tissue 4Anatomy:tissue 5-1Anatomy:tissue 5-2Anatomy:tissue 5-3Anatomy:tissue 5-4Cell TypeSynonymCL IdUBERON IdImage IdTissue Image ID
15 unknown4 Terminally differentiated6 Fetus state 7 Postnatal state 8 Neonatal state 9 Infant state 10 Juvenile 11 Adult5090101000001000000000236GenitaliaTestisLobule of testisSeminiferous tubuleEpitheliumSpermCL:0000019t102, t105, t111

SHOGoiN Cell Methylome

Methylation Profile

GSM1147596

GSM1147597

GSM1147598

GSM1147599

GSM1147600

GSM1200272

GSM1200273

SHOGoiN Cell Id5090101000001000000000-2365090101000001000000000-2365090101000001000000000-2365090101000001000000000-2365090101000001000000000-2365090101000001000000000-2365090101000001000000000-236
Project NameSequence Read ArchiveSequence Read ArchiveSequence Read ArchiveSequence Read ArchiveSequence Read ArchiveSequence Read ArchiveSequence Read Archive
Project IdSRP023116SRP023116SRP023116SRP023116SRP023116SRP023116SRP023116
Assay IdSRP023116_M13SRP023116_M14SRP023116_M15SRP023116_M16SRP023116_M17SRP023116_M28SRP023116_M29
Project:project TitleSingle cell methylome landscapes of mouse embryonic stem cells and early embryos analyzed by reduced representation bisulfite sequencingSingle cell methylome landscapes of mouse embryonic stem cells and early embryos analyzed by reduced representation bisulfite sequencingSingle cell methylome landscapes of mouse embryonic stem cells and early embryos analyzed by reduced representation bisulfite sequencingSingle cell methylome landscapes of mouse embryonic stem cells and early embryos analyzed by reduced representation bisulfite sequencingSingle cell methylome landscapes of mouse embryonic stem cells and early embryos analyzed by reduced representation bisulfite sequencingSingle cell methylome landscapes of mouse embryonic stem cells and early embryos analyzed by reduced representation bisulfite sequencingSingle cell methylome landscapes of mouse embryonic stem cells and early embryos analyzed by reduced representation bisulfite sequencing
Project:project Descriptionhttp://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE47343http://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE47343http://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE47343http://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE47343http://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE47343http://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE47343http://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE47343
Project:project Submission Date31-Aug-1331-Aug-1331-Aug-1331-Aug-1331-Aug-1331-Aug-1331-Aug-13
Project:organization NameBiodynamics Optical Imaging Center, Peking UniversityBiodynamics Optical Imaging Center, Peking UniversityBiodynamics Optical Imaging Center, Peking UniversityBiodynamics Optical Imaging Center, Peking UniversityBiodynamics Optical Imaging Center, Peking UniversityBiodynamics Optical Imaging Center, Peking UniversityBiodynamics Optical Imaging Center, Peking University
Project:stable Contact InformationHongshan Guo, guo-hs@pku.edu.cnHongshan Guo, guo-hs@pku.edu.cnHongshan Guo, guo-hs@pku.edu.cnHongshan Guo, guo-hs@pku.edu.cnHongshan Guo, guo-hs@pku.edu.cnHongshan Guo, guo-hs@pku.edu.cnHongshan Guo, guo-hs@pku.edu.cn
Project:reference Submission StatusPublishedPublishedPublishedPublishedPublishedPublishedPublished
Project:reference AuthorsGuo H, Zhu P, Tang F, Wu X, Wen L, Li XGuo H, Zhu P, Tang F, Wu X, Wen L, Li XGuo H, Zhu P, Tang F, Wu X, Wen L, Li XGuo H, Zhu P, Tang F, Wu X, Wen L, Li XGuo H, Zhu P, Tang F, Wu X, Wen L, Li XGuo H, Zhu P, Tang F, Wu X, Wen L, Li XGuo H, Zhu P, Tang F, Wu X, Wen L, Li X
Project:reference TitleSingle-cell methylome landscapes of mouse embryonic stem cells and early embryos analyzed using reduced representation bisulfite sequencing.Single-cell methylome landscapes of mouse embryonic stem cells and early embryos analyzed using reduced representation bisulfite sequencing.Single-cell methylome landscapes of mouse embryonic stem cells and early embryos analyzed using reduced representation bisulfite sequencing.Single-cell methylome landscapes of mouse embryonic stem cells and early embryos analyzed using reduced representation bisulfite sequencing.Single-cell methylome landscapes of mouse embryonic stem cells and early embryos analyzed using reduced representation bisulfite sequencing.Single-cell methylome landscapes of mouse embryonic stem cells and early embryos analyzed using reduced representation bisulfite sequencing.Single-cell methylome landscapes of mouse embryonic stem cells and early embryos analyzed using reduced representation bisulfite sequencing.
Project:reference Pubmed Id24179143241791432417914324179143241791432417914324179143
Assay:assay TypeMethylomeMethylomeMethylomeMethylomeMethylomeMethylomeMethylome
Assay:assay FactorCell typeCell typeCell typeCell typeCell typeCell typeCell type
Source Cell:sample IdGSM1147596GSM1147597GSM1147598GSM1147599GSM1147600GSM1200272GSM1200273
Source Cell:SHOGoiN Cell Id5090101000001000000000-2365090101000001000000000-2365090101000001000000000-2365090101000001000000000-2365090101000001000000000-2365090101000001000000000-2365090101000001000000000-236
Source Cell:source Cell TypeSpermSpermSpermSpermSpermSpermSperm
Source Cell:source OrganismMouseMouseMouseMouseMouseMouseMouse
Source Cell:race Or Strain129S2/Sv129S2/Sv129S2/Sv129S2/Sv129S2/Sv129S2/Sv129S2/Sv
Source Cell:age Or Stage
Source Cell:source Tissue Or OrganGenitaliaGenitaliaGenitaliaGenitaliaGenitaliaGenitaliaGenitalia
Source Cell:source Cell Karyotype
Source Cell:cell Lineage
Source Cell:organism Genetic Information
Source Cell:health Status
Source Cell:source Providor
Technology:assay TechnologyBisulfite-Seq (RRBS)Bisulfite-Seq (RRBS)Bisulfite-Seq (RRBS)Bisulfite-Seq (RRBS)Bisulfite-Seq (RRBS)Bisulfite-Seq (RRBS)Bisulfite-Seq (RRBS)
Technology:assay Detection InstrumentationHiSeq 2000HiSeq 2000HiSeq 2000HiSeq 2000HiSeq 2000HiSeq 2000HiSeq 2000
Technology:assay Detection Instrument VendorIlluminaIlluminaIlluminaIlluminaIlluminaIlluminaIllumina
Technology:assesed MaterialGenomic DNAGenomic DNAGenomic DNAGenomic DNAGenomic DNAGenomic DNAGenomic DNA
Technology:source Cell FormatSingle cellSingle cellSingle cellSingle cellSingle cellSingle cellSingle cell
Technology:source Cell Preparation Method
Technology:source Cell Identidication Method
Technology:source Cell Treatment
Data:data IdSRR867085SRR867086SRR867087SRR867088SRR867089SRR947915SRR947916
Data:data TypeSequenceSequenceSequenceSequenceSequenceSequenceSequence
Data:data Processing Method
Data:data Processing Software And Version
Data:data Normalization Method
Data:data Normalization Software Name And Version
Data:data Analytical Software And Version
Data:reference Sequence Sourcemm9mm9mm9mm9mm9mm9mm9
Data:genome Annotation Ref