SHOGoiN Cell ID: 6000001010000000000000-724

SHOGoiN Cell Taxonomy

Homo sapiens & Mus musculus cell

No.Germ LayerDifferentiation StateSource AgeAnatomy IdCell Type IdAnatomy:body PartAnatomy:organAnatomy:sub-organAnatomy:tissue 1Anatomy:tissue 2Anatomy:tissue 3Anatomy:tissue 4Anatomy:tissue 5-1Anatomy:tissue 5-2Anatomy:tissue 5-3Anatomy:tissue 5-4Cell TypeSynonymCL IdUBERON IdImage IdTissue Image ID
14:Mesodermal3:Multipotent/Progenitor/Precursor4:Neurula ~6000001010000000000000724UbiquitousBoneBone marrowHematopoietic stem cellCL:0000037

SHOGoiN Cell Transcriptome

Expression Profile

GSM2077292

GSM2077293

GSM2077294

GSM2077295

GSM2077296

SHOGoiN Cell Id6000001010000000000000-7246000001010000000000000-7246000001010000000000000-7246000001010000000000000-7246000001010000000000000-724
Project NameSequence Read ArchiveSequence Read ArchiveSequence Read ArchiveSequence Read ArchiveSequence Read Archive
Project IdSRP068586SRP068586SRP068586SRP068586SRP068586
Assay IdSRP068586_T19SRP068586_T20SRP068586_T21SRP068586_T22SRP068586_T23
Project:project TitleSingle-cell RNA-seq of sorted and micro-dissected mouse bone marrow cellsSingle-cell RNA-seq of sorted and micro-dissected mouse bone marrow cellsSingle-cell RNA-seq of sorted and micro-dissected mouse bone marrow cellsSingle-cell RNA-seq of sorted and micro-dissected mouse bone marrow cellsSingle-cell RNA-seq of sorted and micro-dissected mouse bone marrow cells
Project:project Descriptionhttp://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE76983http://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE76983http://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE76983http://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE76983http://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE76983
Project:project Submission Date19-Jan-1619-Jan-1619-Jan-1619-Jan-1619-Jan-16
Project:organization NameHubrecht InstituteHubrecht InstituteHubrecht InstituteHubrecht InstituteHubrecht Institute
Project:stable Contact InformationJean-Charles Boisset, j.boisset@hubrecht.euJean-Charles Boisset, j.boisset@hubrecht.euJean-Charles Boisset, j.boisset@hubrecht.euJean-Charles Boisset, j.boisset@hubrecht.euJean-Charles Boisset, j.boisset@hubrecht.eu
Project:reference Submission StatusPublishedPublishedPublishedPublishedPublished
Project:reference AuthorsGr_n D, Muraro MJ, Boisset JC, Wiebrands K et al.Gr_n D, Muraro MJ, Boisset JC, Wiebrands K et al.Gr_n D, Muraro MJ, Boisset JC, Wiebrands K et al.Gr_n D, Muraro MJ, Boisset JC, Wiebrands K et al.Gr_n D, Muraro MJ, Boisset JC, Wiebrands K et al.
Project:reference TitleDe Novo Prediction of Stem Cell Identity using Single-Cell Transcriptome Data.De Novo Prediction of Stem Cell Identity using Single-Cell Transcriptome Data.De Novo Prediction of Stem Cell Identity using Single-Cell Transcriptome Data.De Novo Prediction of Stem Cell Identity using Single-Cell Transcriptome Data.De Novo Prediction of Stem Cell Identity using Single-Cell Transcriptome Data.
Project:reference Pubmed Id2734583727345837273458372734583727345837
Assay:assay TypeTranscriptomeTranscriptomeTranscriptomeTranscriptomeTranscriptome
Assay:assay Factor6000001010000000000000-7246000001010000000000000-7246000001010000000000000-7246000001010000000000000-7246000001010000000000000-724
Source Cell:sample IdGSM2077292GSM2077293GSM2077294GSM2077295GSM2077296
Source Cell:SHOGoiN Cell Id6000001010000000000000-7246000001010000000000000-7246000001010000000000000-7246000001010000000000000-7246000001010000000000000-724
Source Cell:source Cell TypeHematopoietic stem cellHematopoietic stem cellHematopoietic stem cellHematopoietic stem cellHematopoietic stem cell
Source Cell:source OrganismMouseMouseMouseMouseMouse
Source Cell:race Or StrainC57BL/6C57BL/6C57BL/6C57BL/6C57BL/6
Source Cell:age Or Stage23-57 wo23-57 wo23-57 wo23-57 wo23-57 wo
Source Cell:source Tissue Or OrganBone marrowBone marrowBone marrowBone marrowBone marrow
Source Cell:source Cell Karyotype
Source Cell:cell Lineage
Source Cell:organism Genetic Information
Source Cell:health Status
Source Cell:source Provider
Technology:assay TechnologyRNA-SeqRNA-SeqRNA-SeqRNA-SeqRNA-Seq
Technology:assay Detection InstrumentationHiSeq 2500NextSeq 500NextSeq 500NextSeq 500NextSeq 500
Technology:assay Detection Instrument VendorIlluminaIlluminaIlluminaIlluminaIllumina
Technology:assessed MaterialTotal RNATotal RNATotal RNATotal RNATotal RNA
Technology:source Cell Format
Technology:source Cell Preparation MethodSingle cell, sortedSingle cell, sortedSingle cell, sortedSingle cell, sortedSingle cell, sorted
Technology:source Cell Identidication Method
Technology:source Cell Treatment
Data:data IdSRR3198319SRR3198320SRR3198321SRR3198322SRR3198323
Data:data TypeSequenceSequenceSequenceSequenceSequence
Data:data Processing Method
Data:data Processing Software And Version
Data:data Normalization Method
Data:data Normalization Software Name And Version
Data:data Analytical Software And Version
Data:reference Sequence Sourcemm10mm10mm10mm10mm10
Data:genome Annotation Ref

SHOGoiN Cell Marker

Cell Type NameStem cell:hematopoietic stem cellStem cell:hematopoietic stem cellStem cell:hematopoietic stem cellStem cell:hematopoietic stem cellStem cell:hematopoietic stem cellStem cell:hematopoietic stem cellStem cell:hematopoietic stem cellStem cell:hematopoietic stem cellStem cell:hematopoietic stem cellStem cell:hematopoietic stem cellStem cell:hematopoietic stem cellStem cell:hematopoietic stem cellStem cell:hematopoietic stem cellStem cell:hematopoietic stem cellStem cell:hematopoietic stem cellStem cell:hematopoietic stem cellStem cell:hematopoietic stem cellStem cell:hematopoietic stem cellStem cell:hematopoietic stem cellStem cell:hematopoietic stem cellStem cell:hematopoietic stem cellStem cell:hematopoietic stem cellStem cell:hematopoietic stem cellStem cell:hematopoietic stem cellStem cell:hematopoietic stem cellStem cell:hematopoietic stem cellStem cell:hematopoietic stem cellImmune system/blood cellHematopoietic stem cellHematopoietic stem cellHematopoietic stem cell
Cell Type SubclassPrimitive hematopoietic stem cell
SHOGoiN Cell Id6000001010000000000000-7246000001010000000000000-7246000001010000000000000-7246000001010000000000000-7246000001010000000000000-7246000001010000000000000-7246000001010000000000000-7246000001010000000000000-7246000001010000000000000-7246000001010000000000000-7246000001010000000000000-7246000001010000000000000-7246000001010000000000000-7246000001010000000000000-7246000001010000000000000-7246000001010000000000000-7246000001010000000000000-7246000001010000000000000-7246000001010000000000000-7246000001010000000000000-7246000001010000000000000-7246000001010000000000000-7246000001010000000000000-7246000001010000000000000-7246000001010000000000000-7246000001010000000000000-7246000001010000000000000-7246000001010000000000000-7246000001010000000000000-7246000001010000000000000-7246000001010000000000000-724
Anatomical LocationBone marrowBone marrowBone marrowBone marrowBone marrowBone marrowBone marrowBone marrowBone marrowBone marrowBone marrowBone marrowBone marrowBone marrowBone marrowBone marrowBone marrowBone marrowBone marrowBone marrowBone marrowBone marrowBone marrowBone marrowBone marrowBone marrowBone marrowBone marrowBone marrowBone marrowBone marrow
Marker Molecule:nameThy-1 membrane glycoprotein (CDw90, Thy-1 antigen, CD90)Neprilysin (Common acute lymphocytic leukemia antigen, CD10, Atriopeptidase, Common acute lymphocytic leukemia antigen, CALLA, MME, EPN)Leukosialin (Galactoglycoprotein, CD43)Polycomb complex protein BMI-1 (BMI-1, RING finger protein 51, RNF51)Endoglin (ENG, CD105)Vascular cell adhesion protein 1 (VCAM-1, CD106)Mast/stem cell growth factor receptor Kit (SCFR, Proto-oncogene c-Kit, KIT, CD117)Signaling lymphocytic activation molecule (CDw150, IPO-3, CD150, SLAMF1, SLAM)Sialomucin core protein 24 (CD164, MUC-24, Endolyn, MGC-24)Actin-like protein 7A (Actin-like-7-alpha, ACTL7A)Endothelial protein C receptor (Activated protein C receptor, CD201)Angiopoietin-1 receptor (Tyrosine-protein kinase receptor TIE-2, hTIE2, CD202b)Platelet endothelial cell adhesion molecule (CD31, PECAM-1)Hematopoietic progenitor cell antigen CD34 (CD34)CD44 antigen (Epican, Extracellular matrix receptor III, Phagocytic glycoprotein 1, PGP-1)CD59 glycoprotein (1F5 antigen, MAC-inhibitory protein, Membrane inhibitor of reactive lysis)Transcription factor Sp7 (Zinc finger protein osterix)Glial fibrillary acidic protein (GFAP)Complement component C1q receptor (CDw93, CD93, C1qRp) Vascular endothelial growth factor receptor 2 (VEGFR-2, Kinase insert domain receptor, KDR, FLK-1, CD309)Granulocyte colony-stimulating factor (G-CSF, Pluripoietin, CSF3)Multidrug resistance-associated protein 1 (MRP1, ATP-binding cassette sub-family C member 1, ABCC1)Cadherin-2 (CDw325, Neural cadherin, N-cadherin, CD325, CDH2, CDHN, NCAD)Neurogenic locus notch homolog protein 1 (Notch1, hN1, Translocation-associated notch protein TAN-1)Multidrug resistance protein 1 (P-glycoprotein , ATP-binding cassette sub-family B member 1, CD243)Wiskott-Aldrich Syndrome Protein (WASP, WAS)Calcium/calmodulin-dependent protein kinase type IV (CaMK IV, CaM kinase-GR, CAMK4)Hematopoietic progenitor cell antigen CD34 (CD34)Hematopoietic progenitor cell antigen CD34 (CD34)Hematopoietic progenitor cell antigen CD34 (CD34)Hematopoietic progenitor cell antigen CD34 (CD34)
Marker Molecule:typeProteinProteinProteinProteinProteinProteinProteinProteinProteinProteinProteinProteinProteinProteinProteinProteinProteinProteinProteinProteinProteinProteinProteinProteinProteinProteinProteinProteinRNARNARNA
Marker Molecule:categoryCD moleculeCD moleculeCD moleculePolycomb groupCD moleculeCD moleculeCD moleculeCD moleculeCD moleculeCD moleculeCD moleculeCD moleculeCD moleculeCD moleculeCD moleculeCD moleculeCD moleculeCD moleculeCD moleculeCD moleculeCD moleculeCD moleculeSkeletalProtein kinaseCD molecule
Subcellular LocalizationPlasma membranePlasma membranePlasma membraneCytosol, NucleusPlasma membranePlasma membranePlasma membranePlasma membranePlasma membrane, Lysosome membrane, Endosomal membranePlasma membranePlasma membranePlasma membrane, Cytosol, CytoskeletonPlasma membranePlasma membranePlasma membranePlasma membrane, SecretedPlasma membranePlasma membranePlasma membranePlasma membrane, Endoplasmic reticulumSecretedPlasma membranePlasma membranePlasma membrane, NucleusPlasma membraneCytosolCytosol, NucleusPlasma membranePlasma membranePlasma membranePlasma membrane
Uniprot IdP04216P08473P16150P35226 P17813P19320P10721Q13291Q04900P61073Q9UNN8Q02763P16284P28906P16070P13987P01831Q9UNQ0 Q9NPY3P35968 P09919P33527P19022P46531P08183P42768Q16566P28906P28906P28906P28906
Gene Id947947947
Source OrganismHumanHumanHumanHumanHumanHumanHumanHumanHumanHumanHumanHumanHumanHumanHumanHumanHumanHumanHumanHumanHumanHumanHumanHumanHumanHumanHumanHumanHumanHumanHuman
Referencehttps://www.rndsystems.com/search?common_name=CD90/Thy1http://www.bdbiosciences.com/documents/cd_marker_handbook.pdfhttp://www.miltenyibiotec.com/en/products-and-services/macs-cell-separation/cell-separation-reagents/b-cells/cd43-microbeads-human.aspxhttp://www.bdbiosciences.com/documents/cd_marker_handbook.pdfhttp://www.bdbiosciences.com/documents/cd_marker_handbook.pdfhttp://www.bdbiosciences.com/documents/cd_marker_handbook.pdfhttp://www.bdbiosciences.com/documents/cd_marker_handbook.pdfhttp://www.bdbiosciences.com/documents/cd_marker_handbook.pdfhttp://www.bdbiosciences.com/documents/cd_marker_handbook.pdfhttp://www.bdbiosciences.com/documents/cd_marker_handbook.pdfhttp://www.bdbiosciences.com/documents/cd_marker_handbook.pdfhttp://www.bdbiosciences.com/documents/cd_marker_handbook.pdfhttp://www.bdbiosciences.com/documents/cd_marker_handbook.pdfhttp://www.bdbiosciences.com/documents/cd_marker_handbook.pdfhttp://www.bdbiosciences.com/documents/cd_marker_handbook.pdfhttp://www.bdbiosciences.com/documents/cd_marker_handbook.pdfhttp://www.bdbiosciences.com/documents/cd_marker_handbook.pdfhttp://www.bdbiosciences.com/documents/cd_marker_handbook.pdfhttp://www.bdbiosciences.com/documents/cd_marker_handbook.pdfhttp://www.bdbiosciences.com/documents/cd_marker_handbook.pdfhttp://www.bdbiosciences.com/documents/cd_marker_handbook.pdfhttp://www.bdbiosciences.com/documents/cd_marker_handbook.pdfhttp://www.bdbiosciences.com/documents/cd_marker_handbook.pdfhttp://www.bdbiosciences.com/documents/cd_marker_handbook.pdfhttp://www.bdbiosciences.com/documents/cd_marker_handbook.pdfhttp://www.bdbiosciences.com/documents/cd_marker_handbook.pdfhttp://www.bdbiosciences.com/documents/cd_marker_handbook.pdfhttps://www.rndsystems.com/search?common_name=CD34PMID:15906238PMID:12510667PMID:17201678