SHOGoiN Cell ID: 6000002000000000000000-051

SHOGoiN Cell Taxonomy

Homo sapiens & Mus musculus cell

No.Germ LayerDifferentiation StateSource AgeAnatomy IdCell Type IdAnatomy:body PartAnatomy:organAnatomy:sub-organAnatomy:tissue 1Anatomy:tissue 2Anatomy:tissue 3Anatomy:tissue 4Anatomy:tissue 5-1Anatomy:tissue 5-2Anatomy:tissue 5-3Anatomy:tissue 5-4Cell TypeSynonymCL IdUBERON IdImage IdTissue Image ID
14 Mesodermal4 Terminally differentiated6 Fetus state 7 Postnatal state 8 Neonatal state 9 Infant state 10 Juvenile 11 Adult6000002000000000000000051UbiquitousCartilageChondrocyteCL:0000138

SHOGoiN Cell Marker

Cell Type NameChondrocyteChondrocyteChondrocyteChondrocyteChondrocyteChondrocyteChondrocyteChondrocyteChondrocyteChondrocyteChondrocyteChondrocyteChondrocyteChondrocyteChondrocyteChondrocyteChondrocyteChondrocyteChondrocyteChondrocyteChondrocyteChondrocyteChondrocyteChondrocyteChondrocyteChondrocyteChondrocyteChondrocyteChondrocyteChondrocyteChondrocyteChondrocyte
Cell Type SubclassMatureMature
SHOGoiN Cell Id6000002000000000000000-0516000002000000000000000-0516000002000000000000000-0516000002000000000000000-0516000002000000000000000-0516000002000000000000000-0516000002000000000000000-0516000002000000000000000-0516000002000000000000000-0516000002000000000000000-0516000002000000000000000-0516000002000000000000000-0516000002000000000000000-0516000002000000000000000-0516000002000000000000000-0516000002000000000000000-0516000002000000000000000-0516000002000000000000000-0516000002000000000000000-0516000002000000000000000-0516000002000000000000000-0516000002000000000000000-0516000002000000000000000-0516000002000000000000000-0516000002000000000000000-0516000002000000000000000-0516000002000000000000000-0516000002000000000000000-0516000002000000000000000-0516000002000000000000000-0516000002000000000000000-0516000002000000000000000-051
Anatomical LocationCartilageCartilageCartilageCartilageCartilageCartilageCartilageCartilageCartilageCartilageCartilageCartilageCartilage, knee jointCartilage, knee jointCartilage, knee jointCartilageCartilageCartilageCartilageCartilageCartilageCartilageCartilageCartilageCartilageCartilageCartilageCartilageCartilageCartilageCartilageCartilage
Marker Molecule:nameCD44 antigen (Epican, Extracellular matrix receptor III, Phagocytic glycoprotein 1, PGP-1)CD151 antigen (GP27, CD151)Syndecan-1/CD138Transcription factor SOX-5 (SOX5)Transcription factor SOX-6 (SOX6)Transcription factor SOX-9Aggrecan core protein (Cartilage-specific proteoglycan core protein, CSPCP, Chondroitin sulfate proteoglycan 1, ACAN, AGC1,CSPG1, MSK16)Collagen alpha-1(II) chain (Alpha-1 type II collagen, COL2A1)Collagen alpha-1(IV) chain (COL4A)H-89Collagen alpha-1(X) chain (COL10A1)Collagenase 3 (MMP13, Matrix metalloproteinase-13)Cell surface glycoprotein MUC18 (Cell surface glycoprotein P1H12, Melanoma cell adhesion molecule, Melanoma-associated antigen A32, S-endo 1 endothelial-associated antigen, CD146, MCAM, MUC18)Collagen alpha-1(I) chain (Alpha-1 type I collagen, COL1A1)Collagen alpha-1(X) chain (COL10A1)Nuclear receptor subfamily 1 group I member 2 (Orphan nuclear receptor PAR1, Orphan nuclear receptor PXR, Pregnane X receptor, Steroid and xenobiotic receptor, SXR, NR1I2, PXR)AP-1Annexin A6 (67 kDa calelectrin, Annexin VI, Annexin-6, Calphobindin-II, CPB-II, Chromobindin-20, Lipocortin VI, Protein III, p68, p70, ANXA6, ANX6)CD151 antigen (GP27, CD151)Glycosaminoglycan xylosylkinase (Xylose kinase, FAM20B)Integral membrane protein 2A (ITM2A)Forkhead box protein C1 (Forkhead-related protein FKHL7, FOXC1, Forkhead-related transcription factor 3)Forkhead box protein C2 (Forkhead-related protein FKHL14, Mesenchyme fork head protein 1, MFH-1 protein, Transcription factor FKH-14, FOXC2, FKHL14, MFH1)Cathepsin B (CTSB, APP secretase)Chondroadherin-like protein (CHADL)Cartilage acidic protein 1 (CRTAC1)Epiphycan (EPYC, Dermatan sulfate proteoglycan 3, Proteoglycan-Lb, Small chondroitin/dermatan sulfate proteoglycan)Bone sialoprotein 2 (IBSP)Matrilin-3 (MATN3)Matrilin-4 (MATN4)Otoraplin (OTOR, Fibrocyte-derived protein, Melanoma inhibitory activity-like protein)Coiled-coil domain-containing protein 80 (URB, Up-regulated in BRS-3 deficient mouse homolog, Down-regulated by oncogenes protein 1)
Marker Molecule:typeProteinProteinProteinProteinProteinProteinProteinProteinProteinProteinProteinProteinProteinProteinProteinProteinProteinProteinProteinProteinProteinProteinProteinProteinProteinProteinProteinProteinProteinProteinProteinProtein
Marker Molecule:categoryCD moleculeCD moleculeType 1 transmembrane proteoglycansTranscription factorTranscription factorTranscription factorProteoglycanExtracellular matrix proteinExtracellular matrix proteinProtein kinase A inhibitorExtracellular matrix proteinExtracellular matrix proteinCD moleculeCD moleculeTranscription factorTranscription factor
Subcellular LocalizationPlasma membranePlasma membranePlasma membraneNucleusNucleusNucleusSecretedSecretedSecretedSecretedSecretedPlasma membraneSecretedSecretedNucleus CytosolPlasma membraneGolgi apparatusPlasma membraneNucleusNucleusLysosome, SecretedSecretedSecretedSecretedSecretedSecretedSecretedSecretedSecreted
Uniprot IdP16070P48509P35711P35712P48436P16112P02458P02462Q03692P45452P43121 P02452Q03692O75469P08133P48509O75063O43736Q12948Q99958P07858Q6NUI6 Q9NQ79Q99645P21815O15232O95460Q9NRC9Q76M96
Gene Id4162127713008856
Source OrganismHumanHumanHumanHumanHumanHumanHumanHumanHumanHumanHumanHumanHumanHumanHumanHumanHumanHumanHumanHumanHumanHumanHumanHumanHumanHumanHumanHumanHumanHumanHumanHuman
Referencehttps://www.rndsystems.com/pathways/mesenchymal-stem-cell-differentiation-pathways-lineage-specific-markershttps://www.rndsystems.com/pathways/mesenchymal-stem-cell-differentiation-pathways-lineage-specific-markershttps://www.rndsystems.com/pathways/mesenchymal-stem-cell-differentiation-pathways-lineage-specific-markershttps://www.rndsystems.com/pathways/mesenchymal-stem-cell-differentiation-pathways-lineage-specific-markershttps://www.rndsystems.com/pathways/mesenchymal-stem-cell-differentiation-pathways-lineage-specific-markershttps://www.rndsystems.com/pathways/mesenchymal-stem-cell-differentiation-pathways-lineage-specific-markershttps://www.rndsystems.com/pathways/mesenchymal-stem-cell-differentiation-pathways-lineage-specific-markershttps://www.rndsystems.com/pathways/mesenchymal-stem-cell-differentiation-pathways-lineage-specific-markershttps://www.rndsystems.com/pathways/mesenchymal-stem-cell-differentiation-pathways-lineage-specific-markershttps://www.rndsystems.com/pathways/mesenchymal-stem-cell-differentiation-pathways-lineage-specific-markersPMID:20959023PMID:20959023PMID:27130221PMID:27094849PMID:27094849PMID:27177772PMID:1633872https://www.rndsystems.com/research-area/chondrogenesis-markershttps://www.rndsystems.com/research-area/chondrogenesis-markershttps://www.rndsystems.com/research-area/chondrogenesis-markershttps://www.rndsystems.com/research-area/chondrogenesis-markershttps://www.rndsystems.com/research-area/chondrogenesis-markershttps://www.rndsystems.com/research-area/chondrogenesis-markershttps://www.rndsystems.com/research-area/chondrogenesis-markershttps://www.rndsystems.com/research-area/chondrogenesis-markershttps://www.rndsystems.com/research-area/chondrogenesis-markershttps://www.rndsystems.com/research-area/chondrogenesis-markershttps://www.rndsystems.com/research-area/chondrogenesis-markershttps://www.rndsystems.com/research-area/chondrogenesis-markershttps://www.rndsystems.com/research-area/chondrogenesis-markershttps://www.rndsystems.com/research-area/chondrogenesis-markershttps://www.rndsystems.com/research-area/chondrogenesis-markers