SHOGoiN Cell ID: 7010000000000000000000-771

SHOGoiN Cell Taxonomy

Homo sapiens & Mus musculus cell

No.Germ LayerDifferentiation StateSource AgeAnatomy IdCell Type IdAnatomy:body PartAnatomy:organAnatomy:sub-organAnatomy:tissue 1Anatomy:tissue 2Anatomy:tissue 3Anatomy:tissue 4Anatomy:tissue 5-1Anatomy:tissue 5-2Anatomy:tissue 5-3Anatomy:tissue 5-4Cell TypeSynonymCL IdUBERON IdImage IdTissue Image ID
11:Non-layered1:Totipotent1:Embryonic (40~50h)7010000000000000000000771Embryo4-cell stage4-cell stage cell (Blastomere)

SHOGoiN Cell Transcriptome

Expression Profile

GSM1160123

GSM1160124

GSM1160125

GSM1080203

GSM1080204

GSM1080205

GSM1112540

GSM1112541

GSM1112542

GSM1112543

GSM1112544

GSM1112545

GSM1112546

GSM1112547

GSM1112548

GSM1112549

GSM1112550

GSM1112551

GSM1112552

GSM1112553

SHOGoiN Cell Id7010000000000000000000-7717010000000000000000000-7717010000000000000000000-7717010000000000000000000-7717010000000000000000000-7717010000000000000000000-7717010000000000000000000-7717010000000000000000000-7717010000000000000000000-7717010000000000000000000-7717010000000000000000000-7717010000000000000000000-7717010000000000000000000-7717010000000000000000000-7717010000000000000000000-7717010000000000000000000-7717010000000000000000000-7717010000000000000000000-7717010000000000000000000-7717010000000000000000000-771
Project NameSequence Read ArchiveSequence Read ArchiveSequence Read ArchiveSequence Read ArchiveSequence Read ArchiveSequence Read ArchiveSequence Read ArchiveSequence Read ArchiveSequence Read ArchiveSequence Read ArchiveSequence Read ArchiveSequence Read ArchiveSequence Read ArchiveSequence Read ArchiveSequence Read ArchiveSequence Read ArchiveSequence Read ArchiveSequence Read ArchiveSequence Read ArchiveSequence Read Archive
Project IdSRP018525SRP018525SRP018525SRP018525SRP018525SRP018525SRP020490SRP020490SRP020490SRP020490SRP020490SRP020490SRP020490SRP020490SRP020490SRP020490SRP020490SRP020490SRP020490SRP020490
Assay IdSRP018525_T27SRP018525_T28SRP018525_T29SRP018525_T6SRP018525_T7SRP018525_T8SRP020490_T51SRP020490_T52SRP020490_T53SRP020490_T54SRP020490_T55SRP020490_T56SRP020490_T57SRP020490_T58SRP020490_T59SRP020490_T60SRP020490_T61SRP020490_T62SRP020490_T63SRP020490_T64
Project:project TitleGenetic Programs in Human and Mouse Early Embryos Revealed by Single-Cell RNA-SequencingGenetic Programs in Human and Mouse Early Embryos Revealed by Single-Cell RNA-SequencingGenetic Programs in Human and Mouse Early Embryos Revealed by Single-Cell RNA-SequencingGenetic Programs in Human and Mouse Early Embryos Revealed by Single-Cell RNA-SequencingGenetic Programs in Human and Mouse Early Embryos Revealed by Single-Cell RNA-SequencingGenetic Programs in Human and Mouse Early Embryos Revealed by Single-Cell RNA-SequencingSingle-cell RNA-Seq reveals dynamic, random monoallelic gene expression in mammalian cellsSingle-cell RNA-Seq reveals dynamic, random monoallelic gene expression in mammalian cellsSingle-cell RNA-Seq reveals dynamic, random monoallelic gene expression in mammalian cellsSingle-cell RNA-Seq reveals dynamic, random monoallelic gene expression in mammalian cellsSingle-cell RNA-Seq reveals dynamic, random monoallelic gene expression in mammalian cellsSingle-cell RNA-Seq reveals dynamic, random monoallelic gene expression in mammalian cellsSingle-cell RNA-Seq reveals dynamic, random monoallelic gene expression in mammalian cellsSingle-cell RNA-Seq reveals dynamic, random monoallelic gene expression in mammalian cellsSingle-cell RNA-Seq reveals dynamic, random monoallelic gene expression in mammalian cellsSingle-cell RNA-Seq reveals dynamic, random monoallelic gene expression in mammalian cellsSingle-cell RNA-Seq reveals dynamic, random monoallelic gene expression in mammalian cellsSingle-cell RNA-Seq reveals dynamic, random monoallelic gene expression in mammalian cellsSingle-cell RNA-Seq reveals dynamic, random monoallelic gene expression in mammalian cellsSingle-cell RNA-Seq reveals dynamic, random monoallelic gene expression in mammalian cells
Project:project Descriptionhttp://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE44183http://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE44183http://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE44183http://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE44183http://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE44183http://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE44183http://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE45719http://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE45719http://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE45719http://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE45719http://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE45719http://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE45719http://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE45719http://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE45719http://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE45719http://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE45719http://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE45719http://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE45719http://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE45719http://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE45719
Project:project Submission Date19-Jul-1319-Jul-1319-Jul-1319-Jul-1319-Jul-1319-Jul-1310-Jan-1410-Jan-1410-Jan-1410-Jan-1410-Jan-1410-Jan-1410-Jan-1410-Jan-1410-Jan-1410-Jan-1410-Jan-1410-Jan-1410-Jan-1410-Jan-14
Project:organization NameHuman Genetics, UCLAHuman Genetics, UCLAHuman Genetics, UCLAHuman Genetics, UCLAHuman Genetics, UCLAHuman Genetics, UCLAKarolinska InstitutetKarolinska InstitutetKarolinska InstitutetKarolinska InstitutetKarolinska InstitutetKarolinska InstitutetKarolinska InstitutetKarolinska InstitutetKarolinska InstitutetKarolinska InstitutetKarolinska InstitutetKarolinska InstitutetKarolinska InstitutetKarolinska Institutet
Project:stable Contact InformationKevin HuangKevin HuangKevin HuangKevin HuangKevin HuangKevin HuangDaniel Ramsk_ld, daniel.ramskold@licr.ki.seDaniel Ramsk_ld, daniel.ramskold@licr.ki.seDaniel Ramsk_ld, daniel.ramskold@licr.ki.seDaniel Ramsk_ld, daniel.ramskold@licr.ki.seDaniel Ramsk_ld, daniel.ramskold@licr.ki.seDaniel Ramsk_ld, daniel.ramskold@licr.ki.seDaniel Ramsk_ld, daniel.ramskold@licr.ki.seDaniel Ramsk_ld, daniel.ramskold@licr.ki.seDaniel Ramsk_ld, daniel.ramskold@licr.ki.seDaniel Ramsk_ld, daniel.ramskold@licr.ki.seDaniel Ramsk_ld, daniel.ramskold@licr.ki.seDaniel Ramsk_ld, daniel.ramskold@licr.ki.seDaniel Ramsk_ld, daniel.ramskold@licr.ki.seDaniel Ramsk_ld, daniel.ramskold@licr.ki.se
Project:reference Submission StatusPublishedPublishedPublishedPublishedPublishedPublishedPublishedPublishedPublishedPublishedPublishedPublishedPublishedPublishedPublishedPublishedPublishedPublishedPublishedPublished
Project:reference AuthorsXue Z, Huang K, Cai C, Cai L et al.Xue Z, Huang K, Cai C, Cai L et al.Xue Z, Huang K, Cai C, Cai L et al.Xue Z, Huang K, Cai C, Cai L et al.Xue Z, Huang K, Cai C, Cai L et al.Xue Z, Huang K, Cai C, Cai L et al.Deng Q, Ramsk_ld D, Reinius B, Sandberg R. Deng Q, Ramsk_ld D, Reinius B, Sandberg R. Deng Q, Ramsk_ld D, Reinius B, Sandberg R. Deng Q, Ramsk_ld D, Reinius B, Sandberg R. Deng Q, Ramsk_ld D, Reinius B, Sandberg R. Deng Q, Ramsk_ld D, Reinius B, Sandberg R. Deng Q, Ramsk_ld D, Reinius B, Sandberg R. Deng Q, Ramsk_ld D, Reinius B, Sandberg R. Deng Q, Ramsk_ld D, Reinius B, Sandberg R. Deng Q, Ramsk_ld D, Reinius B, Sandberg R. Deng Q, Ramsk_ld D, Reinius B, Sandberg R. Deng Q, Ramsk_ld D, Reinius B, Sandberg R. Deng Q, Ramsk_ld D, Reinius B, Sandberg R. Deng Q, Ramsk_ld D, Reinius B, Sandberg R.
Project:reference TitleGenetic programs in human and mouse early embryos revealed by single-cell RNA sequencing.Genetic programs in human and mouse early embryos revealed by single-cell RNA sequencing.Genetic programs in human and mouse early embryos revealed by single-cell RNA sequencing.Genetic programs in human and mouse early embryos revealed by single-cell RNA sequencing.Genetic programs in human and mouse early embryos revealed by single-cell RNA sequencing.Genetic programs in human and mouse early embryos revealed by single-cell RNA sequencing.Single-cell RNA-seq reveals dynamic, random monoallelic gene expression in mammalian cells.Single-cell RNA-seq reveals dynamic, random monoallelic gene expression in mammalian cells.Single-cell RNA-seq reveals dynamic, random monoallelic gene expression in mammalian cells.Single-cell RNA-seq reveals dynamic, random monoallelic gene expression in mammalian cells.Single-cell RNA-seq reveals dynamic, random monoallelic gene expression in mammalian cells.Single-cell RNA-seq reveals dynamic, random monoallelic gene expression in mammalian cells.Single-cell RNA-seq reveals dynamic, random monoallelic gene expression in mammalian cells.Single-cell RNA-seq reveals dynamic, random monoallelic gene expression in mammalian cells.Single-cell RNA-seq reveals dynamic, random monoallelic gene expression in mammalian cells.Single-cell RNA-seq reveals dynamic, random monoallelic gene expression in mammalian cells.Single-cell RNA-seq reveals dynamic, random monoallelic gene expression in mammalian cells.Single-cell RNA-seq reveals dynamic, random monoallelic gene expression in mammalian cells.Single-cell RNA-seq reveals dynamic, random monoallelic gene expression in mammalian cells.Single-cell RNA-seq reveals dynamic, random monoallelic gene expression in mammalian cells.
Project:reference Pubmed Id2389277823892778238927782389277823892778238927782440843524408435244084352440843524408435244084352440843524408435244084352440843524408435244084352440843524408435
Assay:assay TypeTranscriptomeTranscriptomeTranscriptomeTranscriptomeTranscriptomeTranscriptomeTranscriptomeTranscriptomeTranscriptomeTranscriptomeTranscriptomeTranscriptomeTranscriptomeTranscriptomeTranscriptomeTranscriptomeTranscriptomeTranscriptomeTranscriptomeTranscriptome
Assay:assay Factor7010000000000000000000-7717010000000000000000000-7717010000000000000000000-7717010000000000000000000-7717010000000000000000000-7717010000000000000000000-7717010000000000000000000-7717010000000000000000000-7717010000000000000000000-7717010000000000000000000-7717010000000000000000000-7717010000000000000000000-7717010000000000000000000-7717010000000000000000000-7717010000000000000000000-7717010000000000000000000-7717010000000000000000000-7717010000000000000000000-7717010000000000000000000-7717010000000000000000000-771
Source Cell:sample IdGSM1160123GSM1160124GSM1160125GSM1080203GSM1080204GSM1080205GSM1112540GSM1112541GSM1112542GSM1112543GSM1112544GSM1112545GSM1112546GSM1112547GSM1112548GSM1112549GSM1112550GSM1112551GSM1112552GSM1112553
Source Cell:SHOGoiN Cell Id7010000000000000000000-7717010000000000000000000-7717010000000000000000000-7717010000000000000000000-7717010000000000000000000-7717010000000000000000000-7717010000000000000000000-7717010000000000000000000-7717010000000000000000000-7717010000000000000000000-7717010000000000000000000-7717010000000000000000000-7717010000000000000000000-7717010000000000000000000-7717010000000000000000000-7717010000000000000000000-7717010000000000000000000-7717010000000000000000000-7717010000000000000000000-7717010000000000000000000-771
Source Cell:source Cell Type4-cell embryo cell (4-cell embryo)4-cell embryo cell (4-cell embryo)4-cell embryo cell (4-cell embryo)4-cell embryo cell (4-cell embryo)4-cell embryo cell (4-cell embryo)4-cell embryo cell (4-cell embryo)4-cell embryo cell (4-cell embryo)4-cell embryo cell (4-cell embryo)4-cell embryo cell (4-cell embryo)4-cell embryo cell (4-cell embryo)4-cell embryo cell (4-cell embryo)4-cell embryo cell (4-cell embryo)4-cell embryo cell (4-cell embryo)4-cell embryo cell (4-cell embryo)4-cell embryo cell (4-cell embryo)4-cell embryo cell (4-cell embryo)4-cell embryo cell (4-cell embryo)4-cell embryo cell (4-cell embryo)4-cell embryo cell (4-cell embryo)4-cell embryo cell (4-cell embryo)
Source Cell:source OrganismHumanHumanHumanMouseMouseMouseMouseMouseMouseMouseMouseMouseMouseMouseMouseMouseMouseMouseMouseMouse
Source Cell:race Or StrainHan ChinaseHan ChinaseHan ChinaseC57BL/6C57BL/6C57BL/6CAST/EiJ(mother) x C57BL/6J(father), first generation crossCAST/EiJ(mother) x C57BL/6J(father), first generation crossCAST/EiJ(mother) x C57BL/6J(father), first generation crossCAST/EiJ(mother) x C57BL/6J(father), first generation crossCAST/EiJ(mother) x C57BL/6J(father), first generation crossCAST/EiJ(mother) x C57BL/6J(father), first generation crossCAST/EiJ(mother) x C57BL/6J(father), first generation crossCAST/EiJ(mother) x C57BL/6J(father), first generation crossCAST/EiJ(mother) x C57BL/6J(father), first generation crossCAST/EiJ(mother) x C57BL/6J(father), first generation crossCAST/EiJ(mother) x C57BL/6J(father), first generation crossCAST/EiJ(mother) x C57BL/6J(father), first generation crossCAST/EiJ(mother) x C57BL/6J(father), first generation crossCAST/EiJ(mother) x C57BL/6J(father), first generation cross
Source Cell:age Or Stage4-cell stage4-cell stage4-cell stage4-cell stage4-cell stage4-cell stage4-cell stage4-cell stage4-cell stage4-cell stage4-cell stage4-cell stage4-cell stage4-cell stage
Source Cell:source Tissue Or OrganEarly embryonic tissueEarly embryonic tissueEarly embryonic tissueEarly embryonic tissueEarly embryonic tissueEarly embryonic tissueEarly embryonic tissueEarly embryonic tissueEarly embryonic tissueEarly embryonic tissueEarly embryonic tissueEarly embryonic tissueEarly embryonic tissueEarly embryonic tissueEarly embryonic tissueEarly embryonic tissueEarly embryonic tissueEarly embryonic tissueEarly embryonic tissueEarly embryonic tissue
Source Cell:source Cell Karyotype
Source Cell:cell Lineage
Source Cell:organism Genetic Information
Source Cell:health Status
Source Cell:source Provider
Technology:assay TechnologyRNA-seqRNA-seqRNA-seqRNA-seqRNA-seqRNA-seqRNA-SeqRNA-SeqRNA-SeqRNA-SeqRNA-SeqRNA-SeqRNA-SeqRNA-SeqRNA-SeqRNA-SeqRNA-SeqRNA-SeqRNA-SeqRNA-Seq
Technology:assay Detection InstrumentationHiSeq 2000HiSeq 2000HiSeq 2000HiSeq 2000HiSeq 2000HiSeq 2000HiSeq 2000HiSeq 2000HiSeq 2000HiSeq 2000HiSeq 2000HiSeq 2000HiSeq 2000HiSeq 2000HiSeq 2000HiSeq 2000HiSeq 2000HiSeq 2000HiSeq 2000HiSeq 2000
Technology:assay Detection Instrument VendorIlluminaIlluminaIlluminaIlluminaIlluminaIlluminaIlluminaIlluminaIlluminaIlluminaIlluminaIlluminaIlluminaIlluminaIlluminaIlluminaIlluminaIlluminaIlluminaIllumina
Technology:assessed MaterialpolyA RNApolyA RNApolyA RNApolyA RNApolyA RNApolyA RNApolyA RNApolyA RNApolyA RNApolyA RNApolyA RNApolyA RNApolyA RNApolyA RNApolyA RNApolyA RNApolyA RNApolyA RNApolyA RNApolyA RNA
Technology:source Cell Format
Technology:source Cell Preparation MethodSingle cell, dissociatedSingle cell, dissociatedSingle cell, dissociatedSingle cell, dissociatedSingle cell, dissociatedSingle cell, dissociatedSingle cell, dissociatedSingle cell, dissociatedSingle cell, dissociatedSingle cell, dissociatedSingle cell, dissociatedSingle cell, dissociatedSingle cell, dissociatedSingle cell, dissociatedSingle cell, dissociatedSingle cell, dissociatedSingle cell, dissociatedSingle cell, dissociatedSingle cell, dissociatedSingle cell, dissociated
Technology:source Cell Identidication Method
Technology:source Cell Treatment
Data:data IdSRR893057SRR893058SRR893059SRR689241SRR689242SRR689243SRR805223SRR805224SRR805225SRR805226SRR805227SRR805228SRR805229SRR805230SRR805231SRR805232SRR805233SRR805234SRR805235SRR805236
Data:data TypeSequenceSequenceSequenceSequenceSequenceSequenceSequenceSequenceSequenceSequenceSequenceSequenceSequenceSequenceSequenceSequenceSequenceSequenceSequenceSequence
Data:data Processing Method
Data:data Processing Software And Version
Data:data Normalization MethodRPKMRPKMRPKMRPKMRPKMRPKMRPKM RPKM RPKM RPKM RPKM RPKM RPKM RPKM RPKM RPKM RPKM RPKM RPKM RPKM
Data:data Normalization Software Name And Version
Data:data Analytical Software And Versionbowtie 0.12.7bowtie 0.12.7bowtie 0.12.7bowtie 0.12.7bowtie 0.12.7bowtie 0.12.7bowtie 0.12.7bowtie 0.12.7bowtie 0.12.7bowtie 0.12.7bowtie 0.12.7bowtie 0.12.7bowtie 0.12.7bowtie 0.12.7
Data:reference Sequence Sourcehg19hg19hg19mm9mm9mm9mm9mm9mm9mm9mm9mm9mm9mm9mm9mm9mm9mm9mm9mm9
Data:genome Annotation Ref

SHOGoiN Cell Marker

Cell Type Name4-cell stage cell4-cell stage cell4-cell stage cell4-cell stage cell
Cell Type Subclass
SHOGoiN Cell Id7010000000000000000000-7717010000000000000000000-7717010000000000000000000-7717010000000000000000000-771
Anatomical LocationEmbryoEmbryoEmbryoEmbryo
Marker Molecule:nameOCT3B/4Transcription factor SOX-2 (SOX2)Eukaryotic translation initiation factor 1A, X-chromosomal (eIF-1A X isoform, Eukaryotic translation initiation factor 4C, eIF-4C, EIF1AX, EIF1A, EIF4C)Transcription factor GATA-6 (GATA-binding factor 6, GATA6)
Marker Molecule:typeGeneGeneGeneGene
Marker Molecule:categoryTranscription factor
Subcellular LocalizationNucleusCytosolNucleus
Uniprot IdP48431P47813Q92908
Gene Id665719642627
Source OrganismHumanHumanHumanHuman
ReferencePMID:18411410PMID:18411410PMID:18411410PMID:18411410