SHOGoiN Cell ID: 7180101000000000000000-755

SHOGoiN Cell Taxonomy

Homo sapiens & Mus musculus cell

No.Germ LayerDifferentiation StateSource AgeAnatomy IdCell Type IdAnatomy:body PartAnatomy:organAnatomy:sub-organAnatomy:tissue 1Anatomy:tissue 2Anatomy:tissue 3Anatomy:tissue 4Anatomy:tissue 5-1Anatomy:tissue 5-2Anatomy:tissue 5-3Anatomy:tissue 5-4Cell TypeSynonymCL IdUBERON IdImage IdTissue Image ID
11:Non-layered3:Multipotent/Progenitor/Precursor6:Fetus ~7180101000000000000000755EmbryoDevelopmental gonadOvaryPrimordial folliclePrimary oocyteCL:0000654

SHOGoiN Cell Methylome

Methylation Profile

GSM1849308

GSM1849309

GSM1849312

GSM1849315

GSM1849316

GSM1849318

GSM1849319

GSM1849320

GSM2042047

GSM2042050

SHOGoiN Cell Id7180101000000000000000-7557180101000000000000000-7557180101000000000000000-7557180101000000000000000-7557180101000000000000000-7557180101000000000000000-7557180101000000000000000-7557180101000000000000000-7557180101000000000000000-7557180101000000000000000-755
Project NameSequence Read ArchiveSequence Read ArchiveSequence Read ArchiveSequence Read ArchiveSequence Read ArchiveSequence Read ArchiveSequence Read ArchiveSequence Read ArchiveSequence Read ArchiveSequence Read Archive
Project IdSRP062328SRP062328SRP062328SRP062328SRP062328SRP062328SRP062328SRP062328SRP062328SRP062328
Assay IdSRP062328_M4SRP062328_M5SRP062328_M8SRP062328_M11SRP062328_M12SRP062328_M14SRP062328_M15SRP062328_M16SRP062328_M20SRP062328_M23
Project:project TitleHuman oocyte DNA methylomeHuman oocyte DNA methylomeHuman oocyte DNA methylomeHuman oocyte DNA methylomeHuman oocyte DNA methylomeHuman oocyte DNA methylomeHuman oocyte DNA methylomeHuman oocyte DNA methylomeHuman oocyte DNA methylomeHuman oocyte DNA methylome
Project:project Descriptionhttps://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE71985https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE71985https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE71985https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE71985https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE71985https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE71985https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE71985https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE71985https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE71985https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE71985
Project:project Submission Date12-Aug-1512-Aug-1512-Aug-1512-Aug-1512-Aug-1512-Aug-1512-Aug-1512-Aug-1512-Aug-1512-Aug-15
Project:organization NameAlbert Einstein College of MedicineAlbert Einstein College of MedicineAlbert Einstein College of MedicineAlbert Einstein College of MedicineAlbert Einstein College of MedicineAlbert Einstein College of MedicineAlbert Einstein College of MedicineAlbert Einstein College of MedicineAlbert Einstein College of MedicineAlbert Einstein College of Medicine
Project:stable Contact InformationBo Yu, boyumich2@gmail.comBo Yu, boyumich2@gmail.comBo Yu, boyumich2@gmail.comBo Yu, boyumich2@gmail.comBo Yu, boyumich2@gmail.comBo Yu, boyumich2@gmail.comBo Yu, boyumich2@gmail.comBo Yu, boyumich2@gmail.comBo Yu, boyumich2@gmail.comBo Yu, boyumich2@gmail.com
Project:reference Submission StatusPublishedPublishedPublishedPublishedPublishedPublishedPublishedPublishedPublishedPublished
Project:reference AuthorsYu B, Dong X, Gravina S, Kartal _ et al.Yu B, Dong X, Gravina S, Kartal _ et al.Yu B, Dong X, Gravina S, Kartal _ et al.Yu B, Dong X, Gravina S, Kartal _ et al.Yu B, Dong X, Gravina S, Kartal _ et al.Yu B, Dong X, Gravina S, Kartal _ et al.Yu B, Dong X, Gravina S, Kartal _ et al.Yu B, Dong X, Gravina S, Kartal _ et al.Yu B, Dong X, Gravina S, Kartal _ et al.Yu B, Dong X, Gravina S, Kartal _ et al.
Project:reference TitleGenome-wide, Single-Cell DNA Methylomics Reveals Increased Non-CpG Methylation during Human Oocyte Maturation.Genome-wide, Single-Cell DNA Methylomics Reveals Increased Non-CpG Methylation during Human Oocyte Maturation.Genome-wide, Single-Cell DNA Methylomics Reveals Increased Non-CpG Methylation during Human Oocyte Maturation.Genome-wide, Single-Cell DNA Methylomics Reveals Increased Non-CpG Methylation during Human Oocyte Maturation.Genome-wide, Single-Cell DNA Methylomics Reveals Increased Non-CpG Methylation during Human Oocyte Maturation.Genome-wide, Single-Cell DNA Methylomics Reveals Increased Non-CpG Methylation during Human Oocyte Maturation.Genome-wide, Single-Cell DNA Methylomics Reveals Increased Non-CpG Methylation during Human Oocyte Maturation.Genome-wide, Single-Cell DNA Methylomics Reveals Increased Non-CpG Methylation during Human Oocyte Maturation.Genome-wide, Single-Cell DNA Methylomics Reveals Increased Non-CpG Methylation during Human Oocyte Maturation.Genome-wide, Single-Cell DNA Methylomics Reveals Increased Non-CpG Methylation during Human Oocyte Maturation.
Project:reference Pubmed Id28648898286488982864889828648898286488982864889828648898286488982864889828648898
Assay:assay TypeMethylomeMethylomeMethylomeMethylomeMethylomeMethylomeMethylomeMethylomeMethylomeMethylome
Assay:assay FactorOocyte maturationOocyte maturationOocyte maturationOocyte maturationOocyte maturationOocyte maturationOocyte maturationOocyte maturationOocyte maturationOocyte maturation
Source Cell:sample IdGSM1849308GSM1849309GSM1849312GSM1849315GSM1849316GSM1849318GSM1849319GSM1849320GSM2042047GSM2042050
Source Cell:SHOGoiN Cell Id7180101000000000000000-7557180101000000000000000-7557180101000000000000000-7557180101000000000000000-7557180101000000000000000-7557180101000000000000000-7557180101000000000000000-7557180101000000000000000-7557180101000000000000000-7557180101000000000000000-755
Source Cell:source Cell TypeOocyte (germinal vesicle (GV) stage )Oocyte (germinal vesicle (GV) stage )Oocyte (germinal vesicle (GV) stage )Oocyte (germinal vesicle (GV) stage )Oocyte (germinal vesicle (GV) stage )Oocyte (germinal vesicle (GV) stage )Oocyte (germinal vesicle (GV) stage )Oocyte (germinal vesicle (GV) stage )Oocyte (germinal vesicle (GV) stage )Oocyte (germinal vesicle (GV) stage )
Source Cell:source OrganismHumanHumanHumanHumanHumanHumanHumanHumanHumanHuman
Source Cell:race Or StrainFemaleFemaleFemaleFemaleFemaleFemaleFemaleFemaleFemaleFemale
Source Cell:age Or Stage
Source Cell:source Tissue Or OrganGenitaliaGenitaliaGenitaliaGenitaliaGenitaliaGenitaliaGenitaliaGenitaliaGenitaliaGenitalia
Source Cell:source Cell Karyotype
Source Cell:cell Lineage
Source Cell:organism Genetic Information
Source Cell:health Status
Source Cell:source Providor
Technology:assay TechnologyBisulfite-Seq (WGBS)Bisulfite-Seq (WGBS)Bisulfite-Seq (WGBS)Bisulfite-Seq (WGBS)Bisulfite-Seq (WGBS)Bisulfite-Seq (WGBS)Bisulfite-Seq (WGBS)Bisulfite-Seq (WGBS)Bisulfite-Seq (WGBS)Bisulfite-Seq (WGBS)
Technology:assay Detection InstrumentationHiSeq 2000HiSeq 2000HiSeq 2000HiSeq 2000HiSeq 2000HiSeq 2000HiSeq 2000HiSeq 2000HiSeq 2000HiSeq 2000
Technology:assay Detection Instrument VendorIllumina Illumina Illumina Illumina Illumina Illumina Illumina Illumina Illumina Illumina
Technology:assesed MaterialGenomic DNAGenomic DNAGenomic DNAGenomic DNAGenomic DNAGenomic DNAGenomic DNAGenomic DNAGenomic DNAGenomic DNA
Technology:source Cell FormatSingle cellSingle cellSingle cellSingle cellSingle cellSingle cellSingle cellSingle cellSingle cellSingle cell
Technology:source Cell Preparation Method
Technology:source Cell Identidication Method
Technology:source Cell Treatment
Data:data IdSRR2156467SRR2156468SRR2156471SRR2156474SRR2156475SRR2156477SRR2156478SRR2156479SRR3106761SRR3106764
Data:data TypeSequenceSequenceSequenceSequenceSequenceSequenceSequenceSequenceSequenceSequence
Data:data Processing Method
Data:data Processing Software And VersionBismark21 v0.10.1Bismark21 v0.10.1Bismark21 v0.10.1Bismark21 v0.10.1Bismark21 v0.10.1Bismark21 v0.10.1Bismark21 v0.10.1Bismark21 v0.10.1Bismark21 v0.10.1Bismark21 v0.10.1
Data:data Normalization Method
Data:data Normalization Software Name And Version
Data:data Analytical Software And Version
Data:reference Sequence Sourcehg19hg19hg19hg19hg19hg19hg19hg19hg19hg19
Data:genome Annotation Ref