SHOGoiN Cell ID: 8010000000000000000000-003
SHOGoiN Cell Taxonomy
Homo sapiens & Mus musculus cell
No. | Germ Layer | Differentiation State | Source Age | Anatomy Id | Cell Type Id | Anatomy:body Part | Anatomy:organ | Anatomy:sub-organ | Anatomy:tissue 1 | Anatomy:tissue 2 | Anatomy:tissue 3 | Anatomy:tissue 4 | Anatomy:tissue 5-1 | Anatomy:tissue 5-2 | Anatomy:tissue 5-3 | Anatomy:tissue 5-4 | Cell Type | Synonym | CL Id | UBERON Id | Image Id | Tissue Image ID |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
1 | 4:Mesodermal | 4:Terminally differentiated | 6:Fetus 7:Postnatal 8:Neonatal 9:Infant 10:Juvenile 11:Adult | 8010000000000000000000 | 003 | Immune system class | Blood | Eosinophil | CL:0000771 | 58, 79, 436, 437, 453, 511, 526, 541, 548, 554, 558, 568, 597, 598, 607, 646, 656, 657, 661, 662, 694 |
Image
SHOGoiN Cell Id | 8010000000000000000000-003 | 8010000000000000000000-003 | 8010000000000000000000-003 | 8010000000000000000000-003 | 8010000000000000000000-003 | 8010000000000000000000-003 | 8010000000000000000000-003 | 8010000000000000000000-003 | 8010000000000000000000-003 | 8010000000000000000000-003 | 8010000000000000000000-003 | 8010000000000000000000-003 | 8010000000000000000000-003 | 8010000000000000000000-003 | 8010000000000000000000-003 | 8010000000000000000000-003 | 8010000000000000000000-003 | 8010000000000000000000-003 | 8010000000000000000000-003 | 8010000000000000000000-003 | 8010000000000000000000-003 |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Image Id | 58 | 79 | 436 | 437 | 453 | 511 | 526 | 541 | 548 | 554 | 558 | 568 | 597 | 598 | 607 | 646 | 656 | 657 | 661 | 662 | 694 |
Tissue | Immune system (blood) | Immune system (blood) | Immune system (blood) | Immune system (blood) | Immune system (blood) | Immune system (blood) | Immune system (blood) | Immune system (blood) | Immune system (blood) | Immune system (blood) | Immune system (blood) | Immune system (blood) | Immune system (blood) | Immune system (blood) | Immune system (blood) | Immune system (blood) | Immune system (blood) | Immune system (blood) | Immune system (blood) | Immune system (blood) | Immune system (blood) |
Cell Type | Eosinophil | Eosinophil | Eosinophil | Eosinophil | Eosinophil | Eosinophil | Eosinophil | Eosinophil | Eosinophil | Eosinophil | Eosinophil | Eosinophil | Eosinophil | Eosinophil | Eosinophil | Eosinophil | Eosinophil | Eosinophil | Eosinophil | Eosinophil | Eosinophil |
Organism | Human | Human | Human | Human | Human | Human | Human | Human | Human | Human | Human | Human | Human | Human | Human | Human | Human | Human | Human | Human | Human |
Cell Strain | |||||||||||||||||||||
Location | Bone | Stomach | Stomach | Stomach | Stomach | Nose | Immune system | Immune system | Immune system | Immune system | Immune system | Immune system | Immune system | Immune system | Immune system | Immune system | Immune system | Immune system | Immune system | Immune system | Immune system |
Karyotype | |||||||||||||||||||||
Race | Japanese | Japanese | Japanese | Japanese | Japanese | Japanese | Japanese | Japanese | Japanese | Japanese | Japanese | Japanese | Japanese | Japanese | Japanese | Japanese | Japanese | Japanese | Japanese | Japanese | |
Age | 74 | 68 | 68 | 68 | 31 | 79 | 79 | 79 | 79 | 79 | 79 | 79 | 79 | 79 | 79 | 79 | 79 | 79 | 79 | 79 | |
Sex | Male | male | male | male | female | Female | Female | Female | Female | Female | Female | Female | Female | Female | Female | Female | Female | Female | Female | Female | |
Medium | |||||||||||||||||||||
Serum | |||||||||||||||||||||
Other Chemical | |||||||||||||||||||||
Feeder | |||||||||||||||||||||
Other Treatment | |||||||||||||||||||||
Culture Period | |||||||||||||||||||||
Differentiaion | |||||||||||||||||||||
Self Renewal Ability | |||||||||||||||||||||
Onocogenic Transformation | |||||||||||||||||||||
Knock Out Gene | |||||||||||||||||||||
Knock In Gene | |||||||||||||||||||||
Disease | stomach cancer colitis or Crohn's disease | gastric cancer | gastric cancer | gastric cancer | Jaw deformity | Ascending colon cancer | Ascending colon cancer | Ascending colon cancer | Ascending colon cancer | Ascending colon cancer | Ascending colon cancer | Ascending colon cancer | Ascending colon cancer | Ascending colon cancer | Ascending colon cancer | Ascending colon cancer | Ascending colon cancer | Ascending colon cancer | Ascending colon cancer | Ascending colon cancer | |
Cod | |||||||||||||||||||||
Shooting Date | 2005.8.12 | 2011.9.22 | 2011.9.22 | 2011.9.22 | 2011.9.22 | 2013.08.01 | 2013.08.01 | 2013.08.01 | 2013.08.01 | 2013.08.01 | 2013.08.01 | 2013.08.01 | 2013.08.01 | 2013.08.01 | 2013.08.01 | 2013.08.01 | 2013.08.01 | 2013.08.01 | 2013.08.01 | 2013.08.01 | |
Shooting Condition | tissue from normal or mild esophagitis | normal or mild epithelium hyperplasia | normal or mild epithelium hyperplasia | normal or mild epithelium hyperplasia | normal or mild epithelium hyperplasia | ||||||||||||||||
Embedding | Paraffin | paraffin | paraffin | paraffin | paraffin | Paraffin | Paraffin | Paraffin | Paraffin | Paraffin | Paraffin | Paraffin | Paraffin | Paraffin | Paraffin | Paraffin | Paraffin | Paraffin | Paraffin | Paraffin | |
Staining | Hematoxylin | hematoxylin | hematoxylin | hematoxylin | hematoxylin | Hematoxylin | Hematoxylin | Hematoxylin | Hematoxylin | Hematoxylin | Hematoxylin | Hematoxylin | Hematoxylin | Hematoxylin | Hematoxylin | Hematoxylin | Hematoxylin | Hematoxylin | Hematoxylin | Hematoxylin | |
Microscope | OLYMPUS DX51 | OLYMPUS BX50 | OLYMPUS BX50 | OLYMPUS BX50 | OLYMPUS BX50 | OLYMPUS DX50 | OLYMPUS DX50 | OLYMPUS DX50 | OLYMPUS DX50 | OLYMPUS DX50 | OLYMPUS DX50 | OLYMPUS DX50 | OLYMPUS DX50 | OLYMPUS DX50 | OLYMPUS DX50 | OLYMPUS DX50 | OLYMPUS DX50 | OLYMPUS DX50 | OLYMPUS DX50 | OLYMPUS DX50 | |
Camera | OLYMPUS DP21 | OLYMPUS DP20 | OLYMPUS DP20 | OLYMPUS DP20 | OLYMPUS DP20 | OLYMPUS DP20 | OLYMPUS DP20 | OLYMPUS DP20 | OLYMPUS DP20 | OLYMPUS DP20 | OLYMPUS DP20 | OLYMPUS DP20 | OLYMPUS DP20 | OLYMPUS DP20 | OLYMPUS DP20 | OLYMPUS DP20 | OLYMPUS DP20 | OLYMPUS DP20 | OLYMPUS DP20 | OLYMPUS DP20 | |
Image Size X | 1600 | 1600 | 1600 | 1600 | 1600 | 1600 | 1600 | 1600 | 1600 | 1600 | 1600 | 1600 | 1600 | 1600 | 1600 | 1600 | 1600 | 1600 | 1600 | 1600 | |
Image Size Y | 1392 | 1200 | 1200 | 1200 | 1200 | 1200 | 1200 | 1200 | 1200 | 1200 | 1200 | 1200 | 1200 | 1200 | 1200 | 1200 | 1200 | 1200 | 1200 | 1200 | 1200 |
Resolution | 1040 | 72 | 72 | 72 | 72 | 72 | 72 | 72 | 72 | 72 | 72 | 72 | 72 | 72 | 72 | 72 | 72 | 72 | 72 | 72 | 72 |
Magnification | 400 | 400 | 400 | 400 | 400 | 400 | 400 | 400 | 400 | 400 | 400 | 400 | 400 | 400 | 400 | 400 | 400 | 400 | 400 | 400 | |
Contact Person | Takayuki Masuda | Koji Yamanegi | Koji Yamanegi | Koji Yamanegi | Koji Yamanegi | Koji Yamanegi | Koji Yamanegi | Koji Yamanegi | Koji Yamanegi | Koji Yamanegi | Koji Yamanegi | Koji Yamanegi | Koji Yamanegi | Koji Yamanegi | Koji Yamanegi | Koji Yamanegi | Koji Yamanegi | Koji Yamanegi | Koji Yamanegi | Koji Yamanegi | Koji Yamanegi |
masudat@mail.tains.tohoku.ac.jp | yamanegi@hyo-med.ac.jp | yamanegi@hyo-med.ac.jp | yamanegi@hyo-med.ac.jp | yamanegi@hyo-med.ac.jp | yamanegi@hyo-med.ac.jp | yamanegi@hyo-med.ac.jp | yamanegi@hyo-med.ac.jp | yamanegi@hyo-med.ac.jp | yamanegi@hyo-med.ac.jp | yamanegi@hyo-med.ac.jp | yamanegi@hyo-med.ac.jp | yamanegi@hyo-med.ac.jp | yamanegi@hyo-med.ac.jp | yamanegi@hyo-med.ac.jp | yamanegi@hyo-med.ac.jp | yamanegi@hyo-med.ac.jp | yamanegi@hyo-med.ac.jp | yamanegi@hyo-med.ac.jp | yamanegi@hyo-med.ac.jp | yamanegi@hyo-med.ac.jp | |
Telephone | 0798-45-6432 | 0798-45-6432 | 0798-45-6432 | 0798-45-6432 | 0798-45-6432 | 0798-45-6432 | 0798-45-6432 | 0798-45-6432 | 0798-45-6432 | 0798-45-6432 | 0798-45-6432 | 0798-45-6432 | 0798-45-6432 | 0798-45-6432 | 0798-45-6432 | 0798-45-6432 | 0798-45-6432 | 0798-45-6432 | 0798-45-6432 | 0798-45-6432 | |
Fax | 0798-45-6431 | 0798-45-6431 | 0798-45-6431 | 0798-45-6431 | 0798-45-6431 | 0798-45-6431 | 0798-45-6431 | 0798-45-6431 | 0798-45-6431 | 0798-45-6431 | 0798-45-6431 | 0798-45-6431 | 0798-45-6431 | 0798-45-6431 | 0798-45-6431 | 0798-45-6431 | 0798-45-6431 | 0798-45-6431 | 0798-45-6431 | 0798-45-6431 | |
Affiliation | Microbiology and Immunology, Department. of Medical Technology, School of Medicine, Tohoku University | Department of clinical pathology, Hyogo collage of medicine | Department of clinical pathology, Hyogo collage of medicine | Department of clinical pathology, Hyogo collage of medicine | Department of clinical pathology, Hyogo collage of medicine | Department of clinical pathology, Hyogo collage of medicine | Department of clinical pathology, Hyogo collage of medicine | Department of clinical pathology, Hyogo collage of medicine | Department of clinical pathology, Hyogo collage of medicine | Department of clinical pathology, Hyogo collage of medicine | Department of clinical pathology, Hyogo collage of medicine | Department of clinical pathology, Hyogo collage of medicine | Department of clinical pathology, Hyogo collage of medicine | Department of clinical pathology, Hyogo collage of medicine | Department of clinical pathology, Hyogo collage of medicine | Department of clinical pathology, Hyogo collage of medicine | Department of clinical pathology, Hyogo collage of medicine | Department of clinical pathology, Hyogo collage of medicine | Department of clinical pathology, Hyogo collage of medicine | Department of clinical pathology, Hyogo collage of medicine | Department of clinical pathology, Hyogo collage of medicine |
Zip Code | 980-8575 | 663-8501 | 663-8501 | 663-8501 | 663-8501 | 663-8501 | 663-8501 | 663-8501 | 663-8501 | 663-8501 | 663-8501 | 663-8501 | 663-8501 | 663-8501 | 663-8501 | 663-8501 | 663-8501 | 663-8501 | 663-8501 | 663-8501 | 663-8501 |
Address | 2-1, Seiryo-machi, Aoba-ku, Sendai, Miyagi | 1-1, Mukogawa, Nishinomiya, Hyogo | 1-1, Mukogawa, Nishinomiya, Hyogo | 1-1, Mukogawa, Nishinomiya, Hyogo | 1-1, Mukogawa, Nishinomiya, Hyogo | 1-1, Mukogawa, Nishinomiya, Hyogo | 1-1, Mukogawa, Nishinomiya, Hyogo | 1-1, Mukogawa, Nishinomiya, Hyogo | 1-1, Mukogawa, Nishinomiya, Hyogo | 1-1, Mukogawa, Nishinomiya, Hyogo | 1-1, Mukogawa, Nishinomiya, Hyogo | 1-1, Mukogawa, Nishinomiya, Hyogo | 1-1, Mukogawa, Nishinomiya, Hyogo | 1-1, Mukogawa, Nishinomiya, Hyogo | 1-1, Mukogawa, Nishinomiya, Hyogo | 1-1, Mukogawa, Nishinomiya, Hyogo | 1-1, Mukogawa, Nishinomiya, Hyogo | 1-1, Mukogawa, Nishinomiya, Hyogo | 1-1, Mukogawa, Nishinomiya, Hyogo | 1-1, Mukogawa, Nishinomiya, Hyogo | 1-1, Mukogawa, Nishinomiya, Hyogo |
Country | Japan | Japan | Japan | Japan | Japan | Japan | Japan | Japan | Japan | Japan | Japan | Japan | Japan | Japan | Japan | Japan | Japan | Japan | Japan | Japan | Japan |
Note | |||||||||||||||||||||
Nucleous Area | 1615 | 213 | 159.5 | 121.5 | 212 | 164.5 | 5377.5 | 2269 | 823.5 | 1083 | 1043.5 | 6513 | 1299.5 | 881 | 4173.5 | 3876.5 | 910 | 1303.5 | 1065 | 491.5 | 6527 |
Nucleous Circularity | 0.78 | 0.87 | 0.717054 | 0.758357 | 0.775078 | 0.730025 | 0.34349 | 0.291007 | 0.545119 | 0.286087 | 0.334939 | 0.365572 | 0.436682 | 0.585241 | 0.279175 | 0.343667 | 0.433006 | 0.358131 | 0.370077 | 0.472547 | 0.367111 |
Nucleous Bending | 1717 | 242 | 0.666667 | 0.756757 | 1.53846 | 0.595745 | 1.75853 | 3.78462 | 4.1913 | 3.33333 | 3.0559 | 1.27885 | 3.19497 | 1.7069 | 3.1339 | 1.24925 | 4.16176 | 3.87571 | 4.8642 | 3.73737 | 1.54067 |
Nucleous Convex Area | 487338 | 7354.44 | 188 | 144 | 248 | 196 | 6486 | 3139 | 997 | 1586 | 1454 | 7275 | 1629 | 1030 | 5050 | 4542 | 1124 | 1784 | 1405 | 655 | 7504 |
Nucleous Ellipse Long Axis | 60.17 | 17.83 | 20.1557 | 17.1208 | 21.2162 | 20.5123 | 141.658 | 80.0073 | 40.3968 | 54.1539 | 44.9137 | 197.097 | 63.3884 | 36.537 | 154.815 | 153.376 | 37.9854 | 43.9401 | 44.8153 | 30.5763 | 172.872 |
Nucleous Inertia | 0.45 | 2.54 | 5204.34 | 2845 | 8266.11 | 5447.14 | 7.91E+06 | 1.38E+06 | 120663 | 290726 | 200107 | 1.62E+07 | 432872 | 129202 | 7.00E+06 | 5.79E+06 | 138456 | 290060 | 201732 | 42360.5 | 1.34E+07 |
Cell Area | 2405.5 | 2466.5 | 493 | 685.5 | 869.5 | 594 | 490.5 | 577.5 | 308 | 274.5 | 301.5 | 806.5 | 396.5 | 209.5 | 592.5 | 567 | 308 | 252.5 | 688 | 95.5 | 621 |
Cell Circularity | 0.72 | 0.63 | 0.763431 | 0.653507 | 0.614955 | 0.495716 | 0.501976 | 0.774305 | 0.79904 | 0.882306 | 0.83513 | 0.705679 | 0.877457 | 0.726836 | 0.578599 | 0.748018 | 0.847021 | 0.790507 | 0.824092 | 0.850839 | 0.7685 |
Cell Bending | 2.82 | 2.81 | 2.05263 | 4.16495 | 2.83186 | 1.72549 | 0.602151 | 1.87342 | 2.2069 | 0.45283 | 0.45614 | 1.3271 | 1.23077 | 0.612245 | 1.05618 | 0.55814 | 1.42857 | 2.37736 | 1.48889 | 0.545455 | 0.488889 |
Cell Convex Area | 2645 | 2796 | 560 | 639 | 341 | 304 | 332 | 882 | 438 | 241 | 656 | 636 | 343 | 285 | 742 | 113 | 690 | ||||
Cell Ellipse Long Axis | 59.94 | 69.65 | 26.1168 | 32.4591 | 34.3822 | 34.3935 | 47.596 | 33.8803 | 24.6624 | 19.7357 | 23.938 | 48.8807 | 23.3674 | 23.6573 | 51.2459 | 32.8248 | 22.407 | 22.5344 | 37.549 | 12.9955 | 33.0214 |
Cell Inertia | 939664 | 1.11E+06 | 39300 | 78086.5 | 123776 | 62718.4 | 73901.2 | 59821.7 | 16893.3 | 12141.8 | 15771.9 | 142460 | 25386.4 | 9021.25 | 102144 | 57749.5 | 15666.7 | 11488.8 | 84837 | 1538.98 | 67849 |
Cell-nucleous Area Ratio | 0.67 | 0.09 | 0.323529 | 0.177243 | 0.243818 | 0.276936 | 10.9633 | 3.929 | 2.6737 | 3.94536 | 3.46103 | 8.07564 | 3.27743 | 4.20525 | 7.04388 | 6.83686 | 2.95455 | 5.16238 | 1.54797 | 5.1466 | 10.5105 |
Cell-nucleous Eccentricity1 | 0.05 | 0.27 | 0.0815543 | 0.148813 | 0.214871 | 0.137608 | 3.19416 | 0.983976 | 0.256324 | 0.606134 | 0.195097 | 2.85656 | 0.663624 | 0.196422 | 3.01651 | 1.66011 | 0.113022 | 0.538146 | 0.0424355 | 0.299365 | 2.33404 |
Cell-nucleous Eccentricity2 | 0.05 | 0.17 | 0.0765792 | 0.127025 | 0.205661 | 0.0919439 | 0.92826 | 0.647329 | 0.167182 | 0.548077 | 0.132103 | 1.23597 | 0.617192 | 0.0945191 | 0.883091 | 1.13744 | 0.0892577 | 0.346592 | 0.0266318 | 0.217647 | 1.74307 |
Cell-nucleous Eccentricity3 | 0.08 | 0.8 | 0.196478 | 0.448656 | 0.551054 | 0.306739 | 0.889024 | 0.562366 | 0.153554 | 0.387241 | 0.0992294 | 1.40287 | 0.54107 | 0.0706145 | 1.26576 | 1.11777 | 0.0639051 | 0.190549 | 0.0315589 | 0.130777 | 1.17751 |
Cell-nucleous Eccentricity4 | 0.05 | 0.68 | 0.0992276 | 0.240825 | 0.333286 | 0.154165 | 0.311887 | 0.274121 | 0.102065 | 0.199739 | 0.0704078 | 0.306526 | 0.227521 | 0.0612001 | 0.292315 | 0.24343 | 0.0526518 | 0.177748 | 0.0223138 | 0.092504 | 0.332956 |