SHOGoiN Cell ID: 8010000000000000000000

SHOGoiN Cell Taxonomy

Homo sapiens & Mus musculus cell

No.Germ LayerDifferentiation StateSource AgeAnatomy IdCell Type IdAnatomy:body PartAnatomy:organAnatomy:sub-organAnatomy:tissue 1Anatomy:tissue 2Anatomy:tissue 3Anatomy:tissue 4Anatomy:tissue 5-1Anatomy:tissue 5-2Anatomy:tissue 5-3Anatomy:tissue 5-4Cell TypeSynonymCL IdUBERON IdImage IdTissue Image ID
14 Mesodermal4 Terminally differentiated6 Fetus state 7 Postnatal state 8 Neonatal state 9 Infant state 10 Juvenile 11 Adult8010000000000000000000001Immune system classBloodB cellCL:000023640
24 Mesodermal4 Terminally differentiated6 Fetus state 7 Postnatal state 8 Neonatal state 9 Infant state 10 Juvenile 11 Adult8010000000000000000000027Immune system classBloodMemory B cellCL:0000787
34 Mesodermal4 Terminally differentiated6 Fetus state 7 Postnatal state 8 Neonatal state 9 Infant state 10 Juvenile 11 Adult8010000000000000000000286Immune system classBloodActivated B cell
44 Mesodermal4 Terminally differentiated6 Fetus state 7 Postnatal state 8 Neonatal state 9 Infant state 10 Juvenile 11 Adult8010000000000000000000287Immune system classBloodNaive B cellCL:0000788
54 Mesodermal4 Terminally differentiated6 Fetus state 7 Postnatal state 8 Neonatal state 9 Infant state 10 Juvenile 11 Adult8010000000000000000000002Immune system classBloodBasophilCL:0000767403
64 Mesodermal4 Terminally differentiated6 Fetus state 7 Postnatal state 8 Neonatal state 9 Infant state 10 Juvenile 11 Adult8010000000000000000000003Immune system classBloodEosinophilCL:000077158, 79, 436, 437, 453, 511, 526, 541, 548, 554, 558, 568, 597, 598, 607, 646, 656, 657, 661, 662, 694
74 Mesodermal4 Terminally differentiated6 Fetus state 7 Postnatal state 8 Neonatal state 9 Infant state 10 Juvenile 11 Adult8010000000000000000000004Immune system classBloodLeukocyteCL:0000738
84 Mesodermal4 Terminally differentiated6 Fetus state 7 Postnatal state 8 Neonatal state 9 Infant state 10 Juvenile 11 Adult8010000000000000000000005Immune system classBloodLymphocyteCL:000054237, 53, 78, 157, 158, 159, 160, 161, 402, 414, 426, 456, 457, 499, 509, 510, 517, 527, 533, 599, 600, 601
94 Mesodermal4 Terminally differentiated6 Fetus state 7 Postnatal state 8 Neonatal state 9 Infant state 10 Juvenile 11 Adult8010000000000000000000006Immune system classBloodMacrophageCL:000023551, 137, 171, 311, 312, 313, 625, 626, 627, 659, 660
104 Mesodermal4 Terminally differentiated6 Fetus state 7 Postnatal state 8 Neonatal state 9 Infant state 10 Juvenile 11 Adult8010000000000000000000007Immune system classBloodM1 macrophageCL:0000863
114 Mesodermal4 Terminally differentiated6 Fetus state 7 Postnatal state 8 Neonatal state 9 Infant state 10 Juvenile 11 Adult8010000000000000000000008Immune system classBloodM2 macrophageCL:0000890
124 Mesodermal4 Terminally differentiated6 Fetus state 7 Postnatal state 8 Neonatal state 9 Infant state 10 Juvenile 11 Adult8010000000000000000000010Immune system classBloodMast cellCL:000009732, 488, 489
134 Mesodermal4 Terminally differentiated6 Fetus state 7 Postnatal state 8 Neonatal state 9 Infant state 10 Juvenile 11 Adult8010000000000000000000011Immune system classBloodMonocyteCL:0000576
144 Mesodermal4 Terminally differentiated6 Fetus state 7 Postnatal state 8 Neonatal state 9 Infant state 10 Juvenile 11 Adult8010000000000000000000288Immune system classBloodCD16+ monocyteCL:0002397
154 Mesodermal4 Terminally differentiated6 Fetus state 7 Postnatal state 8 Neonatal state 9 Infant state 10 Juvenile 11 Adult8010000000000000000000012Immune system classBloodNeutrophilCL:000077531, 60, 980, 981
164 Mesodermal4 Terminally differentiated6 Fetus state 7 Postnatal state 8 Neonatal state 9 Infant state 10 Juvenile 11 Adult8010000000000000000000013Immune system classBloodPlasma cellCL:00007866, 17, 20, 52, 67, 74, 80, 174, 410, 420, 421, 431, 432, 438, 439, 454, 455, 480, 521, 522, 530, 534, 538, 547, 549, 551, 557, 562, 565, 566, 570, 587, 590, 596, 603, 608, 609, 610, 621, 622, 623, 628
174 Mesodermal4 Terminally differentiated6 Fetus state 7 Postnatal state 8 Neonatal state 9 Infant state 10 Juvenile 11 Adult8010000000000000000000014Immune system classBloodRed blood cell (erythrocyte)CL:000023256, 571, 584, 982, 983, 984, 985
184 Mesodermal4 Terminally differentiated6 Fetus state 7 Postnatal state 8 Neonatal state 9 Infant state 10 Juvenile 11 Adult8010000000000000000000015Immune system classBloodT cellCL:0000084
194 Mesodermal4 Terminally differentiated6 Fetus state 7 Postnatal state 8 Neonatal state 9 Infant state 10 Juvenile 11 Adult8010000000000000000000283Immune system classBloodActivated CD4+ T cellCL:0000896
204 Mesodermal4 Terminally differentiated6 Fetus state 7 Postnatal state 8 Neonatal state 9 Infant state 10 Juvenile 11 Adult8010000000000000000000284Immune system classBloodActivated CD8+ T cellCL:0000906
214 Mesodermal4 Terminally differentiated6 Fetus state 7 Postnatal state 8 Neonatal state 9 Infant state 10 Juvenile 11 Adult8010000000000000000000016Immune system classBloodT helper cellCL:0000912
224 Mesodermal4 Terminally differentiated6 Fetus state 7 Postnatal state 8 Neonatal state 9 Infant state 10 Juvenile 11 Adult8010000000000000000000280Immune system classBloodNaive T cell (Th0 cell)CL:0000898
234 Mesodermal4 Terminally differentiated6 Fetus state 7 Postnatal state 8 Neonatal state 9 Infant state 10 Juvenile 11 Adult8010000000000000000000281Immune system classBloodNa_ve CD4+ T cellCL:0000895
244 Mesodermal4 Terminally differentiated6 Fetus state 7 Postnatal state 8 Neonatal state 9 Infant state 10 Juvenile 11 Adult8010000000000000000000282Immune system classBloodNa_ve CD8+ T cell
254 Mesodermal4 Terminally differentiated6 Fetus state 7 Postnatal state 8 Neonatal state 9 Infant state 10 Juvenile 11 Adult8010000000000000000000263Immune system classBloodT helper1 (Th1) cellCL:0000545
264 Mesodermal4 Terminally differentiated6 Fetus state 7 Postnatal state 8 Neonatal state 9 Infant state 10 Juvenile 11 Adult8010000000000000000000264Immune system classBloodT helper2 (Th2) cellCL:0000546
274 Mesodermal4 Terminally differentiated6 Fetus state 7 Postnatal state 8 Neonatal state 9 Infant state 10 Juvenile 11 Adult8010000000000000000000265Immune system classBloodT helper3 (Th3) cell
284 Mesodermal4 Terminally differentiated6 Fetus state 7 Postnatal state 8 Neonatal state 9 Infant state 10 Juvenile 11 Adult8010000000000000000000266Immune system classBloodT helper9 (Th9) cellCL:0002061
294 Mesodermal4 Terminally differentiated6 Fetus state 7 Postnatal state 8 Neonatal state 9 Infant state 10 Juvenile 11 Adult8010000000000000000000267Immune system classBloodT helper17 (Th17) cellCL:0000899
304 Mesodermal4 Terminally differentiated6 Fetus state 7 Postnatal state 8 Neonatal state 9 Infant state 10 Juvenile 11 Adult8010000000000000000000268Immune system classBloodT helper22 (Th22) cellCL:0001042
314 Mesodermal4 Terminally differentiated6 Fetus state 7 Postnatal state 8 Neonatal state 9 Infant state 10 Juvenile 11 Adult8010000000000000000000269Immune system classBloodFollicular helper (Tfh) T cellCL_0002038
324 Mesodermal4 Terminally differentiated6 Fetus state 7 Postnatal state 8 Neonatal state 9 Infant state 10 Juvenile 11 Adult8010000000000000000000270Immune system classBloodMemory T cellCL:0000813
334 Mesodermal4 Terminally differentiated6 Fetus state 7 Postnatal state 8 Neonatal state 9 Infant state 10 Juvenile 11 Adult8010000000000000000000271Immune system classBloodCentral CD4+ memory T (Tcm) cellCL:0000904
344 Mesodermal4 Terminally differentiated6 Fetus state 7 Postnatal state 8 Neonatal state 9 Infant state 10 Juvenile 11 Adult8010000000000000000000272Immune system classBloodCentral CD8+ memory T (Tcm) cellCL:0000907
354 Mesodermal4 Terminally differentiated6 Fetus state 7 Postnatal state 8 Neonatal state 9 Infant state 10 Juvenile 11 Adult8010000000000000000000273Immune system classBloodEffector CD4+ memory T (Tem) cellCL:0000905
364 Mesodermal4 Terminally differentiated6 Fetus state 7 Postnatal state 8 Neonatal state 9 Infant state 10 Juvenile 11 Adult8010000000000000000000274Immune system classBloodEffector CD8+ memory T (Tem) cellCL:0000913
374 Mesodermal4 Terminally differentiated6 Fetus state 7 Postnatal state 8 Neonatal state 9 Infant state 10 Juvenile 11 Adult8010000000000000000000275Immune system classBloodResident memory T (Trm) cell
384 Mesodermal4 Terminally differentiated6 Fetus state 7 Postnatal state 8 Neonatal state 9 Infant state 10 Juvenile 11 Adult8010000000000000000000276Immune system classBloodRegulatory T (Treg) cellCL:0000815
394 Mesodermal4 Terminally differentiated6 Fetus state 7 Postnatal state 8 Neonatal state 9 Infant state 10 Juvenile 11 Adult8010000000000000000000277Immune system classBloodCD8+ cytotoxic T lymphocyteCL:0000794
404 Mesodermal4 Terminally differentiated6 Fetus state 7 Postnatal state 8 Neonatal state 9 Infant state 10 Juvenile 11 Adult8010000000000000000000278Immune system classBloodGamma delta T cellCL:0000798
414 Mesodermal4 Terminally differentiated6 Fetus state 7 Postnatal state 8 Neonatal state 9 Infant state 10 Juvenile 11 Adult8010000000000000000000279Immune system classBloodNatural killer T (NKT) cellCL:0000814
424 Mesodermal4 Terminally differentiated6 Fetus state 7 Postnatal state 8 Neonatal state 9 Infant state 10 Juvenile 11 Adult8010000000000000000000031Immune system classBloodPlatelet (thrombocyte)CL:0000233
434 Mesodermal4 Terminally differentiated6 Fetus state 7 Postnatal state 8 Neonatal state 9 Infant state 10 Juvenile 11 Adult8010000000000000000000032Immune system classBloodMyeloid dendritic cellCL:0001057
444 Mesodermal4 Terminally differentiated6 Fetus state 7 Postnatal state 8 Neonatal state 9 Infant state 10 Juvenile 11 Adult8010000000000000000000009Immune system classBloodActivated myeloid dendritic cell
454 Mesodermal4 Terminally differentiated6 Fetus state 7 Postnatal state 8 Neonatal state 9 Infant state 10 Juvenile 11 Adult8010000000000000000000040Immune system classBloodPlasmacytoid dendritic cellCL:0001058
464 Mesodermal4 Terminally differentiated6 Fetus state 7 Postnatal state 8 Neonatal state 9 Infant state 10 Juvenile 11 Adult8010000000000000000000261Immune system classBloodNatural killer cellCL:0000623
474 Mesodermal4 Terminally differentiated6 Fetus state 7 Postnatal state 8 Neonatal state 9 Infant state 10 Juvenile 11 Adult8010000000000000000000050Immune system classBloodGranulocyteCL:0000094
484 Mesodermal4 Terminally differentiated4 Neurula state ~8010000000000000000000786Immune system classBloodImmature B cell (Early B cell)CL:0000816
494 Mesodermal4 Terminally differentiated6 Fetus state 7 Postnatal state 8 Neonatal state 9 Infant state 10 Juvenile 11 Adult8010000000000000000000030Immune system classBloodMegakaryocyteCL:0000556
No.Germ LayerDifferentiation StateSource AgeAnatomy IdCell Type IdAnatomy:body PartAnatomy:organAnatomy:sub-organAnatomy:tissue 1Anatomy:tissue 2Anatomy:tissue 3Anatomy:tissue 4Anatomy:tissue 5-1Anatomy:tissue 5-2Anatomy:tissue 5-3Anatomy:tissue 5-4Cell TypeSynonymCL IdUBERON IdImage IdTissue Image ID
14:Mesodermal3:Multipotent/Progenitor/Precursor4:Neurula ~8010000000000000000000711Immune system classBloodCFU-GMCL:0000557
24:Mesodermal3:Multipotent/Progenitor/Precursor6:Fetus ~8010000000000000000000724Immune system classBloodHematopoietic stem cellCL:0000037
34:Mesodermal3:Multipotent/Progenitor/Precursor4:Neurula ~8010000000000000000000732Immune system classBloodMegakaryoblast
44:Mesodermal3:Multipotent/Progenitor/Precursor4:Neurula ~8010000000000000000000757Immune system classBloodProerythroblastCL:0000547
54:Mesodermal3:Multipotent/Progenitor/Precursor4:Neurula ~8010000000000000000000768Immune system classBloodHematopoietic precursor cellCL:0008001
64:Mesodermal3:Multipotent/Progenitor/Precursor4:Neurula ~8010000000000000000000783Immune system classBloodMyeloblast (CFU-G)CL:0000835
74:Mesodermal3:Multipotent/Progenitor/Precursor4:Neurula ~8010000000000000000000787Immune system classBloodIntermediate B cell (transitional stage B cell)CL:0000818
84:Mesodermal3:Multipotent/Progenitor/Precursor4:Neurula ~8010000000000000000000854Immune system classBloodPre conventional dendritic cell CL:0002010
94:Mesodermal3:Multipotent/Progenitor/Precursor4:Neurula ~8010000000000000000000856Immune system classBloodPre-pro B cellCL:0000826

SHOGoiN Cell Transcriptome

Expression Profile

GSM1080212

SHOGoiN Cell Id8010000000000000000000
Project NameSequence Read Archive
Project IdSRP018525
Assay IdSRP018525_T15
Project:project TitleGenetic Programs in Human and Mouse Early Embryos Revealed by Single-Cell RNA-Sequencing
Project:project Descriptionhttp://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE44183
Project:project Submission Date19-Jul-13
Project:organization NameHuman Genetics, UCLA
Project:stable Contact InformationKevin Huang
Project:reference Submission StatusPublished
Project:reference AuthorsXue Z, Huang K, Cai C, Cai L et al.
Project:reference TitleGenetic programs in human and mouse early embryos revealed by single-cell RNA sequencing.
Project:reference Pubmed Id23892778
Assay:assay TypeTranscriptome
Assay:assay Factor8010000000000000000000
Source Cell:sample IdGSM1080212
Source Cell:SHOGoiN Cell Id8010000000000000000000
Source Cell:source Cell TypeBlood cell
Source Cell:source OrganismHuman
Source Cell:race Or StrainHan Chinase
Source Cell:age Or Stage
Source Cell:source Tissue Or OrganBlood
Source Cell:source Cell Karyotype
Source Cell:cell Lineage
Source Cell:organism Genetic Information
Source Cell:health Status
Source Cell:source Provider
Technology:assay TechnologyRNA-seq
Technology:assay Detection InstrumentationHiSeq 2000
Technology:assay Detection Instrument VendorIllumina
Technology:assessed MaterialpolyA RNA
Technology:source Cell Format
Technology:source Cell Preparation MethodSingle cell, dissociated
Technology:source Cell Identidication Method
Technology:source Cell Treatment
Data:data IdSRR689250
Data:data TypeSequence
Data:data Processing Method
Data:data Processing Software And Version
Data:data Normalization MethodRPKM
Data:data Normalization Software Name And Version
Data:data Analytical Software And Version
Data:reference Sequence Sourcehg19
Data:genome Annotation Ref