SHOGoiN Cell ID: 8020000000000000000000-711

SHOGoiN Cell Taxonomy

Homo sapiens & Mus musculus cell

No.Germ LayerDifferentiation StateSource AgeAnatomy IdCell Type IdAnatomy:body PartAnatomy:organAnatomy:sub-organAnatomy:tissue 1Anatomy:tissue 2Anatomy:tissue 3Anatomy:tissue 4Anatomy:tissue 5-1Anatomy:tissue 5-2Anatomy:tissue 5-3Anatomy:tissue 5-4Cell TypeSynonymCL IdUBERON IdImage IdTissue Image ID
14:Mesodermal3:Multipotent/Progenitor/Precursor4:Neurula ~8020000000000000000000711Immune system classEmbryonic bloodCFU-GM (granulocyte-monocyte progenitor, GMP)CL:0000557

SHOGoiN Cell Transcriptome

Expression Profile

GSM1977412

GSM1977418

SHOGoiN Cell Id8020000000000000000000-7118020000000000000000000-711
Project NameSequence Read ArchiveSequence Read Archive
Project IdSRP067661SRP067661
Assay IdSRP067661_T14SRP067661_T20
Project:project TitleDistinct routes of lineage development reshape the human blood hierarchy across ontogenyDistinct routes of lineage development reshape the human blood hierarchy across ontogeny
Project:project Descriptionhttp://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE76234http://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE76234
Project:project Submission Date2015/12/212015/12/21
Project:organization NameUniversity Health Network, University of TorontoUniversity Health Network, University of Toronto
Project:stable Contact Informationsazandi@gmail.comsazandi@gmail.com
Project:reference Submission StatusPublishedPublished
Project:reference AuthorsNotta F, Zandi S, Takayama N, Dobson S et al.Notta F, Zandi S, Takayama N, Dobson S et al.
Project:reference TitleDistinct routes of lineage development reshape the human blood hierarchy across ontogeny.Distinct routes of lineage development reshape the human blood hierarchy across ontogeny.
Project:reference Pubmed Id2654160926541609
Assay:assay TypeTranscriptomeTranscriptome
Assay:assay Factor8020000000000000000000-7118020000000000000000000-711
Source Cell:sample IdGSM1977412GSM1977418
Source Cell:SHOGoiN Cell Id8020000000000000000000-7118020000000000000000000-711
Source Cell:source Cell TypeGMP CFU-GM (granulocyte-monocyte progenitor, GMP) (Cord blood)GMP CFU-GM (granulocyte-monocyte progenitor, GMP) (Cord blood)
Source Cell:source OrganismHumanHuman
Source Cell:race Or Strain
Source Cell:age Or StageNeonatalNeonatal
Source Cell:source Tissue Or OrganEmbryonic bloodEmbryonic blood
Source Cell:source Cell Karyotype
Source Cell:cell Lineage
Source Cell:organism Genetic Information
Source Cell:health Status
Source Cell:source Provider
Technology:assay TechnologyRNA-Seq, SMARTseqRNA-Seq, SMARTseq
Technology:assay Detection InstrumentationHiSeq 2000HiSeq 2000
Technology:assay Detection Instrument VendorIlluminaIllumina
Technology:assessed MaterialTotal RNATotal RNA
Technology:source Cell Format
Technology:source Cell Preparation MethodSingle cellSingle cell
Technology:source Cell Identidication Method
Technology:source Cell Treatment
Data:data IdSRR3039613SRR3039619
Data:data TypeSequenceSequence
Data:data Processing MethodAlignment software: STARAlignment software: STAR
Data:data Processing Software And Version
Data:data Normalization Method
Data:data Normalization Software Name And Version
Data:data Analytical Software And VersionCufflinksCufflinks
Data:reference Sequence Sourcehg19hg19
Data:genome Annotation Ref