SHOGoiN Cell ID: 8020000000000000000000-737

SHOGoiN Cell Taxonomy

Homo sapiens & Mus musculus cell

No.Germ LayerDifferentiation StateSource AgeAnatomy IdCell Type IdAnatomy:body PartAnatomy:organAnatomy:sub-organAnatomy:tissue 1Anatomy:tissue 2Anatomy:tissue 3Anatomy:tissue 4Anatomy:tissue 5-1Anatomy:tissue 5-2Anatomy:tissue 5-3Anatomy:tissue 5-4Cell TypeSynonymCL IdUBERON IdImage IdTissue Image ID
14:Mesodermal3:Multipotent/Progenitor/Precursor4:Neurula ~8020000000000000000000737Immune system classEmbryonic bloodMyeloid stem cell (CFU-GEMM, CMP)

SHOGoiN Cell Transcriptome

Expression Profile

GSM1977399

GSM1977400

GSM1977404

GSM1977405

GSM1977406

GSM1977411

GSM1977417

SHOGoiN Cell Id8020000000000000000000-7378020000000000000000000-7378020000000000000000000-7378020000000000000000000-7378020000000000000000000-7378020000000000000000000-7378020000000000000000000-737
Project NameSequence Read ArchiveSequence Read ArchiveSequence Read ArchiveSequence Read ArchiveSequence Read ArchiveSequence Read ArchiveSequence Read Archive
Project IdSRP067661SRP067661SRP067661SRP067661SRP067661SRP067661SRP067661
Assay IdSRP067661_T1SRP067661_T2SRP067661_T6SRP067661_T7SRP067661_T8SRP067661_T13SRP067661_T19
Project:project TitleDistinct routes of lineage development reshape the human blood hierarchy across ontogenyDistinct routes of lineage development reshape the human blood hierarchy across ontogenyDistinct routes of lineage development reshape the human blood hierarchy across ontogenyDistinct routes of lineage development reshape the human blood hierarchy across ontogenyDistinct routes of lineage development reshape the human blood hierarchy across ontogenyDistinct routes of lineage development reshape the human blood hierarchy across ontogenyDistinct routes of lineage development reshape the human blood hierarchy across ontogeny
Project:project Descriptionhttp://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE76234http://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE76234http://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE76234http://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE76234http://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE76234http://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE76234http://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE76234
Project:project Submission Date2015/12/212015/12/212015/12/212015/12/212015/12/212015/12/212015/12/21
Project:organization NameUniversity Health Network, University of TorontoUniversity Health Network, University of TorontoUniversity Health Network, University of TorontoUniversity Health Network, University of TorontoUniversity Health Network, University of TorontoUniversity Health Network, University of TorontoUniversity Health Network, University of Toronto
Project:stable Contact Informationsazandi@gmail.comsazandi@gmail.comsazandi@gmail.comsazandi@gmail.comsazandi@gmail.comsazandi@gmail.comsazandi@gmail.com
Project:reference Submission StatusPublishedPublishedPublishedPublishedPublishedPublishedPublished
Project:reference AuthorsNotta F, Zandi S, Takayama N, Dobson S et al.Notta F, Zandi S, Takayama N, Dobson S et al.Notta F, Zandi S, Takayama N, Dobson S et al.Notta F, Zandi S, Takayama N, Dobson S et al.Notta F, Zandi S, Takayama N, Dobson S et al.Notta F, Zandi S, Takayama N, Dobson S et al.Notta F, Zandi S, Takayama N, Dobson S et al.
Project:reference TitleDistinct routes of lineage development reshape the human blood hierarchy across ontogeny.Distinct routes of lineage development reshape the human blood hierarchy across ontogeny.Distinct routes of lineage development reshape the human blood hierarchy across ontogeny.Distinct routes of lineage development reshape the human blood hierarchy across ontogeny.Distinct routes of lineage development reshape the human blood hierarchy across ontogeny.Distinct routes of lineage development reshape the human blood hierarchy across ontogeny.Distinct routes of lineage development reshape the human blood hierarchy across ontogeny.
Project:reference Pubmed Id26541609265416092654160926541609265416092654160926541609
Assay:assay TypeTranscriptomeTranscriptomeTranscriptomeTranscriptomeTranscriptomeTranscriptomeTranscriptome
Assay:assay Factor8020000000000000000000-7378020000000000000000000-7378020000000000000000000-7378020000000000000000000-7378020000000000000000000-7378020000000000000000000-7378020000000000000000000-737
Source Cell:sample IdGSM1977399GSM1977400GSM1977404GSM1977405GSM1977406GSM1977411GSM1977417
Source Cell:SHOGoiN Cell Id8020000000000000000000-7378020000000000000000000-7378020000000000000000000-7378020000000000000000000-7378020000000000000000000-7378020000000000000000000-7378020000000000000000000-737
Source Cell:source Cell TypeCMP++ Myeloid stem cell (CFU-GEMM, CMP) (Cord blood)CMP-- Myeloid stem cell (CFU-GEMM, CMP) (Cord blood)CMP-- Myeloid stem cell (CFU-GEMM, CMP) (Cord blood)CMP++ Myeloid stem cell (CFU-GEMM, CMP) (Cord blood)CMP-- Myeloid stem cell (CFU-GEMM, CMP) (Cord blood)CMP+- Myeloid stem cell (CFU-GEMM, CMP) (Cord blood)CMP+- Myeloid stem cell (CFU-GEMM, CMP) (Cord blood)
Source Cell:source OrganismHumanHumanHumanHumanHumanHumanHuman
Source Cell:race Or Strain
Source Cell:age Or StageNeonatalNeonatalNeonatalNeonatalNeonatalNeonatalNeonatal
Source Cell:source Tissue Or OrganEmbryonic bloodEmbryonic bloodEmbryonic bloodEmbryonic bloodEmbryonic bloodEmbryonic bloodEmbryonic blood
Source Cell:source Cell Karyotype
Source Cell:cell Lineage
Source Cell:organism Genetic Information
Source Cell:health Status
Source Cell:source Provider
Technology:assay TechnologyRNA-Seq, SMARTseqRNA-Seq, SMARTseqRNA-Seq, SMARTseqRNA-Seq, SMARTseqRNA-Seq, SMARTseqRNA-Seq, SMARTseqRNA-Seq, SMARTseq
Technology:assay Detection InstrumentationHiSeq 2000HiSeq 2000HiSeq 2000HiSeq 2000HiSeq 2000HiSeq 2000HiSeq 2000
Technology:assay Detection Instrument VendorIlluminaIlluminaIlluminaIlluminaIlluminaIlluminaIllumina
Technology:assessed MaterialTotal RNATotal RNATotal RNATotal RNATotal RNATotal RNATotal RNA
Technology:source Cell Format
Technology:source Cell Preparation MethodSingle cellSingle cellSingle cellSingle cellSingle cellSingle cellSingle cell
Technology:source Cell Identidication Method
Technology:source Cell Treatment
Data:data IdSRR3039600SRR3039601SRR3039605SRR3039606SRR3039607SRR3039612SRR3039618
Data:data TypeSequenceSequenceSequenceSequenceSequenceSequenceSequence
Data:data Processing MethodAlignment software: STARAlignment software: STARAlignment software: STARAlignment software: STARAlignment software: STARAlignment software: STARAlignment software: STAR
Data:data Processing Software And Version
Data:data Normalization Method
Data:data Normalization Software Name And Version
Data:data Analytical Software And VersionCufflinksCufflinksCufflinksCufflinksCufflinksCufflinksCufflinks
Data:reference Sequence Sourcehg19hg19hg19hg19hg19hg19hg19
Data:genome Annotation Ref