SHOGoiN Cell ID: 8020000000000000000000-972

SHOGoiN Cell Taxonomy

Homo sapiens & Mus musculus cell

No.Germ LayerDifferentiation StateSource AgeAnatomy IdCell Type IdAnatomy:body PartAnatomy:organAnatomy:sub-organAnatomy:tissue 1Anatomy:tissue 2Anatomy:tissue 3Anatomy:tissue 4Anatomy:tissue 5-1Anatomy:tissue 5-2Anatomy:tissue 5-3Anatomy:tissue 5-4Cell TypeSynonymCL IdUBERON IdImage IdTissue Image ID
14:Mesodermal3:Multipotent/Progenitor/Precursor4:Neurula ~8020000000000000000000972Immune system classEmbryonic bloodMultipotent progenitor (MPP)

SHOGoiN Cell Transcriptome

Expression Profile

GSM1977410

GSM1977415

GSM1977416

GSM1977421

GSM1977422

SHOGoiN Cell Id8020000000000000000000-9728020000000000000000000-9728020000000000000000000-9728020000000000000000000-9728020000000000000000000-972
Project NameSequence Read ArchiveSequence Read ArchiveSequence Read ArchiveSequence Read ArchiveSequence Read Archive
Project IdSRP067661SRP067661SRP067661SRP067661SRP067661
Assay IdSRP067661_T12SRP067661_T17SRP067661_T18SRP067661_T23SRP067661_T24
Project:project TitleDistinct routes of lineage development reshape the human blood hierarchy across ontogenyDistinct routes of lineage development reshape the human blood hierarchy across ontogenyDistinct routes of lineage development reshape the human blood hierarchy across ontogenyDistinct routes of lineage development reshape the human blood hierarchy across ontogenyDistinct routes of lineage development reshape the human blood hierarchy across ontogeny
Project:project Descriptionhttp://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE76234http://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE76234http://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE76234http://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE76234http://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE76234
Project:project Submission Date2015/12/212015/12/212015/12/212015/12/212015/12/21
Project:organization NameUniversity Health Network, University of TorontoUniversity Health Network, University of TorontoUniversity Health Network, University of TorontoUniversity Health Network, University of TorontoUniversity Health Network, University of Toronto
Project:stable Contact Informationsazandi@gmail.comsazandi@gmail.comsazandi@gmail.comsazandi@gmail.comsazandi@gmail.com
Project:reference Submission StatusPublishedPublishedPublishedPublishedPublished
Project:reference AuthorsNotta F, Zandi S, Takayama N, Dobson S et al.Notta F, Zandi S, Takayama N, Dobson S et al.Notta F, Zandi S, Takayama N, Dobson S et al.Notta F, Zandi S, Takayama N, Dobson S et al.Notta F, Zandi S, Takayama N, Dobson S et al.
Project:reference TitleDistinct routes of lineage development reshape the human blood hierarchy across ontogeny.Distinct routes of lineage development reshape the human blood hierarchy across ontogeny.Distinct routes of lineage development reshape the human blood hierarchy across ontogeny.Distinct routes of lineage development reshape the human blood hierarchy across ontogeny.Distinct routes of lineage development reshape the human blood hierarchy across ontogeny.
Project:reference Pubmed Id2654160926541609265416092654160926541609
Assay:assay TypeTranscriptomeTranscriptomeTranscriptomeTranscriptomeTranscriptome
Assay:assay Factor8020000000000000000000-9728020000000000000000000-9728020000000000000000000-9728020000000000000000000-9728020000000000000000000-972
Source Cell:sample IdGSM1977410GSM1977415GSM1977416GSM1977421GSM1977422
Source Cell:SHOGoiN Cell Id8020000000000000000000-9728020000000000000000000-9728020000000000000000000-9728020000000000000000000-9728020000000000000000000-972
Source Cell:source Cell TypeMPP+- Multipotent progenitor (MPP) (Cord blood)MPP++ Multipotent progenitor (MPP) (Cord blood)MPP-- Multipotent progenitor (MPP) (Cord blood)MPP++ Multipotent progenitor (MPP) (Cord blood)MPP-- Multipotent progenitor (MPP) (Cord blood)
Source Cell:source OrganismHumanHumanHumanHumanHuman
Source Cell:race Or Strain
Source Cell:age Or StageNeonatalNeonatalNeonatalNeonatalNeonatal
Source Cell:source Tissue Or OrganEmbryonic bloodEmbryonic bloodEmbryonic bloodEmbryonic bloodEmbryonic blood
Source Cell:source Cell Karyotype
Source Cell:cell Lineage
Source Cell:organism Genetic Information
Source Cell:health Status
Source Cell:source Provider
Technology:assay TechnologyRNA-Seq, SMARTseqRNA-Seq, SMARTseqRNA-Seq, SMARTseqRNA-Seq, SMARTseqRNA-Seq, SMARTseq
Technology:assay Detection InstrumentationHiSeq 2000HiSeq 2000HiSeq 2000HiSeq 2000HiSeq 2000
Technology:assay Detection Instrument VendorIlluminaIlluminaIlluminaIlluminaIllumina
Technology:assessed MaterialTotal RNATotal RNATotal RNATotal RNATotal RNA
Technology:source Cell Format
Technology:source Cell Preparation MethodSingle cellSingle cellSingle cellSingle cellSingle cell
Technology:source Cell Identidication Method
Technology:source Cell Treatment
Data:data IdSRR3039611SRR3039616SRR3039617SRR3039622SRR3039623
Data:data TypeSequenceSequenceSequenceSequenceSequence
Data:data Processing MethodAlignment software: STARAlignment software: STARAlignment software: STARAlignment software: STARAlignment software: STAR
Data:data Processing Software And Version
Data:data Normalization Method
Data:data Normalization Software Name And Version
Data:data Analytical Software And VersionCufflinksCufflinksCufflinksCufflinksCufflinks
Data:reference Sequence Sourcehg19hg19hg19hg19hg19
Data:genome Annotation Ref