SHOGoiN Cell ID: 9060700-795

SHOGoiN Cell Taxonomy

Homo sapiens & Mus musculus cell

No.Germ LayerDifferentiation StateSource AgeAnatomy IdCell Type IdAnatomy:level 1Anatomy:level 2Anatomy:level 3Anatomy:level 4-1Anatomy:level 4-2Anatomy:level 5-1Anatomy:level 5-2Anatomy:level 5-3Anatomy:level 6Cell TypeSynonymCL IdUBERON IdImage IdTissue Image ID
11:Non-layered3:Multipotent/Progenitor/Precursor2:Blastula (4d~7d)9060700795EmbryoBlastocystTrophoblastTrophoblast cell

SHOGoiN Cell Transcriptome

Expression Profile

GSM1624222

GSM1624223

GSM1624224

GSM1624225

GSM1624226

GSM1624227

GSM1624229

GSM1624230

GSM1624231

GSM1624233

GSM1624234

GSM1624235

GSM1624236

GSM1624237

GSM1868815-1

GSM1868815-2

GSM1868815-3

GSM1868815-4

GSM1868815-5

GSM1868816-1

GSM1868816-2

GSM1868816-3

GSM1868816-4

SHOGoiN Cell Id9060700-7959060700-7959060700-7959060700-7959060700-7959060700-7959060700-7959060700-7959060700-7959060700-7959060700-7959060700-7959060700-7959060700-7959060700-7959060700-7959060700-7959060700-7959060700-7959060700-7959060700-7959060700-7959060700-795
Project NameSequence Read ArchiveSequence Read ArchiveSequence Read ArchiveSequence Read ArchiveSequence Read ArchiveSequence Read ArchiveSequence Read ArchiveSequence Read ArchiveSequence Read ArchiveSequence Read ArchiveSequence Read ArchiveSequence Read ArchiveSequence Read ArchiveSequence Read ArchiveSequence Read ArchiveSequence Read ArchiveSequence Read ArchiveSequence Read ArchiveSequence Read ArchiveSequence Read ArchiveSequence Read ArchiveSequence Read ArchiveSequence Read Archive
Project IdSRP055810SRP055810SRP055810SRP055810SRP055810SRP055810SRP055810SRP055810SRP055810SRP055810SRP055810SRP055810SRP055810SRP055810SRP055810SRP055810SRP055810SRP055810SRP055810SRP055810SRP055810SRP055810SRP055810
Assay IdSRP055810_T1SRP055810_T2SRP055810_T3SRP055810_T4SRP055810_T5SRP055810_T6SRP055810_T8SRP055810_T9SRP055810_T10SRP055810_T12SRP055810_T13SRP055810_T14SRP055810_T15SRP055810_T16SRP055810_T43SRP055810_T44SRP055810_T45SRP055810_T46SRP055810_T47SRP055810_T48SRP055810_T49SRP055810_T50SRP055810_T51
Project:project TitleSingle-Cell RNA-seq Defines the Three Cell Lineages of the Human BlastocystSingle-Cell RNA-seq Defines the Three Cell Lineages of the Human BlastocystSingle-Cell RNA-seq Defines the Three Cell Lineages of the Human BlastocystSingle-Cell RNA-seq Defines the Three Cell Lineages of the Human BlastocystSingle-Cell RNA-seq Defines the Three Cell Lineages of the Human BlastocystSingle-Cell RNA-seq Defines the Three Cell Lineages of the Human BlastocystSingle-Cell RNA-seq Defines the Three Cell Lineages of the Human BlastocystSingle-Cell RNA-seq Defines the Three Cell Lineages of the Human BlastocystSingle-Cell RNA-seq Defines the Three Cell Lineages of the Human BlastocystSingle-Cell RNA-seq Defines the Three Cell Lineages of the Human BlastocystSingle-Cell RNA-seq Defines the Three Cell Lineages of the Human BlastocystSingle-Cell RNA-seq Defines the Three Cell Lineages of the Human BlastocystSingle-Cell RNA-seq Defines the Three Cell Lineages of the Human BlastocystSingle-Cell RNA-seq Defines the Three Cell Lineages of the Human BlastocystSingle-Cell RNA-seq Defines the Three Cell Lineages of the Human BlastocystSingle-Cell RNA-seq Defines the Three Cell Lineages of the Human BlastocystSingle-Cell RNA-seq Defines the Three Cell Lineages of the Human BlastocystSingle-Cell RNA-seq Defines the Three Cell Lineages of the Human BlastocystSingle-Cell RNA-seq Defines the Three Cell Lineages of the Human BlastocystSingle-Cell RNA-seq Defines the Three Cell Lineages of the Human BlastocystSingle-Cell RNA-seq Defines the Three Cell Lineages of the Human BlastocystSingle-Cell RNA-seq Defines the Three Cell Lineages of the Human BlastocystSingle-Cell RNA-seq Defines the Three Cell Lineages of the Human Blastocyst
Project:project Descriptionhttp://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE66507http://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE66507http://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE66507http://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE66507http://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE66507http://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE66507http://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE66507http://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE66507http://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE66507http://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE66507http://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE66507http://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE66507http://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE66507http://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE66507http://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE66507http://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE66507http://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE66507http://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE66507http://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE66507http://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE66507http://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE66507http://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE66507http://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE66507
Project:project Submission Date4-Mar-154-Mar-154-Mar-154-Mar-154-Mar-154-Mar-154-Mar-154-Mar-154-Mar-154-Mar-154-Mar-154-Mar-154-Mar-154-Mar-154-Mar-154-Mar-154-Mar-154-Mar-154-Mar-154-Mar-154-Mar-154-Mar-154-Mar-15
Project:organization NameCrick InstituteCrick InstituteCrick InstituteCrick InstituteCrick InstituteCrick InstituteCrick InstituteCrick InstituteCrick InstituteCrick InstituteCrick InstituteCrick InstituteCrick InstituteCrick InstituteCrick InstituteCrick InstituteCrick InstituteCrick InstituteCrick InstituteCrick InstituteCrick InstituteCrick InstituteCrick Institute
Project:stable Contact InformationPaul Blakeley, blakeleyp@gmail.comPaul Blakeley, blakeleyp@gmail.comPaul Blakeley, blakeleyp@gmail.comPaul Blakeley, blakeleyp@gmail.comPaul Blakeley, blakeleyp@gmail.comPaul Blakeley, blakeleyp@gmail.comPaul Blakeley, blakeleyp@gmail.comPaul Blakeley, blakeleyp@gmail.comPaul Blakeley, blakeleyp@gmail.comPaul Blakeley, blakeleyp@gmail.comPaul Blakeley, blakeleyp@gmail.comPaul Blakeley, blakeleyp@gmail.comPaul Blakeley, blakeleyp@gmail.comPaul Blakeley, blakeleyp@gmail.comPaul Blakeley, blakeleyp@gmail.comPaul Blakeley, blakeleyp@gmail.comPaul Blakeley, blakeleyp@gmail.comPaul Blakeley, blakeleyp@gmail.comPaul Blakeley, blakeleyp@gmail.comPaul Blakeley, blakeleyp@gmail.comPaul Blakeley, blakeleyp@gmail.comPaul Blakeley, blakeleyp@gmail.comPaul Blakeley, blakeleyp@gmail.com
Project:reference Submission StatusPublishedPublishedPublishedPublishedPublishedPublishedPublishedPublishedPublishedPublishedPublishedPublishedPublishedPublishedPublishedPublishedPublishedPublishedPublishedPublishedPublishedPublishedPublished
Project:reference AuthorsBlakeley P, Fogarty NM, Del Valle I, Wamaitha SE et al. Blakeley P, Fogarty NM, Del Valle I, Wamaitha SE et al. Blakeley P, Fogarty NM, Del Valle I, Wamaitha SE et al. Blakeley P, Fogarty NM, Del Valle I, Wamaitha SE et al. Blakeley P, Fogarty NM, Del Valle I, Wamaitha SE et al. Blakeley P, Fogarty NM, Del Valle I, Wamaitha SE et al. Blakeley P, Fogarty NM, Del Valle I, Wamaitha SE et al. Blakeley P, Fogarty NM, Del Valle I, Wamaitha SE et al. Blakeley P, Fogarty NM, Del Valle I, Wamaitha SE et al. Blakeley P, Fogarty NM, Del Valle I, Wamaitha SE et al. Blakeley P, Fogarty NM, Del Valle I, Wamaitha SE et al. Blakeley P, Fogarty NM, Del Valle I, Wamaitha SE et al. Blakeley P, Fogarty NM, Del Valle I, Wamaitha SE et al. Blakeley P, Fogarty NM, Del Valle I, Wamaitha SE et al. Blakeley P, Fogarty NM, Del Valle I, Wamaitha SE et al. Blakeley P, Fogarty NM, Del Valle I, Wamaitha SE et al. Blakeley P, Fogarty NM, Del Valle I, Wamaitha SE et al. Blakeley P, Fogarty NM, Del Valle I, Wamaitha SE et al. Blakeley P, Fogarty NM, Del Valle I, Wamaitha SE et al. Blakeley P, Fogarty NM, Del Valle I, Wamaitha SE et al. Blakeley P, Fogarty NM, Del Valle I, Wamaitha SE et al. Blakeley P, Fogarty NM, Del Valle I, Wamaitha SE et al. Blakeley P, Fogarty NM, Del Valle I, Wamaitha SE et al.
Project:reference TitleDefining the three cell lineages of the human blastocyst by single-cell RNA-seq. Defining the three cell lineages of the human blastocyst by single-cell RNA-seq. Defining the three cell lineages of the human blastocyst by single-cell RNA-seq. Defining the three cell lineages of the human blastocyst by single-cell RNA-seq. Defining the three cell lineages of the human blastocyst by single-cell RNA-seq. Defining the three cell lineages of the human blastocyst by single-cell RNA-seq. Defining the three cell lineages of the human blastocyst by single-cell RNA-seq. Defining the three cell lineages of the human blastocyst by single-cell RNA-seq. Defining the three cell lineages of the human blastocyst by single-cell RNA-seq. Defining the three cell lineages of the human blastocyst by single-cell RNA-seq. Defining the three cell lineages of the human blastocyst by single-cell RNA-seq. Defining the three cell lineages of the human blastocyst by single-cell RNA-seq. Defining the three cell lineages of the human blastocyst by single-cell RNA-seq. Defining the three cell lineages of the human blastocyst by single-cell RNA-seq. Defining the three cell lineages of the human blastocyst by single-cell RNA-seq. Defining the three cell lineages of the human blastocyst by single-cell RNA-seq. Defining the three cell lineages of the human blastocyst by single-cell RNA-seq. Defining the three cell lineages of the human blastocyst by single-cell RNA-seq. Defining the three cell lineages of the human blastocyst by single-cell RNA-seq. Defining the three cell lineages of the human blastocyst by single-cell RNA-seq. Defining the three cell lineages of the human blastocyst by single-cell RNA-seq. Defining the three cell lineages of the human blastocyst by single-cell RNA-seq. Defining the three cell lineages of the human blastocyst by single-cell RNA-seq.
Project:reference Pubmed Id2629330026293300262933002629330026293300262933002629330026293300262933002629330026293300262933002629330026293300262933002629330026293300262933002629330026293300262933002629330026293300
Assay:assay TypeTranscriptomeTranscriptomeTranscriptomeTranscriptomeTranscriptomeTranscriptomeTranscriptomeTranscriptomeTranscriptomeTranscriptomeTranscriptomeTranscriptomeTranscriptomeTranscriptomeTranscriptomeTranscriptomeTranscriptomeTranscriptomeTranscriptomeTranscriptomeTranscriptomeTranscriptomeTranscriptome
Assay:assay Factor9060700-7959060700-7959060700-7959060700-7959060700-7959060700-7959060700-7959060700-7959060700-7959060700-7959060700-7959060700-7959060700-7959060700-7959060700-7959060700-7959060700-7959060700-7959060700-7959060700-7959060700-7959060700-7959060700-795
Source Cell:sample IdGSM1624222GSM1624223GSM1624224GSM1624225GSM1624226GSM1624227GSM1624229GSM1624230GSM1624231GSM1624233GSM1624234GSM1624235GSM1624236GSM1624237GSM1868815-1GSM1868815-2GSM1868815-3GSM1868815-4GSM1868815-5GSM1868816-1GSM1868816-2GSM1868816-3GSM1868816-4
Source Cell:SHOGoiN Cell Id9060700-7959060700-7959060700-7959060700-7959060700-7959060700-7959060700-7959060700-7959060700-7959060700-7959060700-7959060700-7959060700-7959060700-7959060700-7959060700-7959060700-7959060700-7959060700-7959060700-7959060700-7959060700-7959060700-795
Source Cell:source Cell TypeTrophectodermTrophectodermTrophectodermTrophectodermTrophectodermTrophectodermTrophectodermTrophectodermTrophectodermTrophectodermTrophectodermTrophectodermTrophectodermTrophectodermTrophectodermTrophectodermTrophectodermTrophectodermTrophectodermTrophectodermTrophectodermTrophectodermTrophectoderm
Source Cell:source OrganismHumanHumanHumanHumanHumanHumanHumanHumanHumanHumanHumanHumanHumanHumanHumanHumanHumanHumanHumanHumanHumanHumanHuman
Source Cell:race Or Strain
Source Cell:age Or StageBlastocyst (6-7 days post fertilisation) Blastocyst (6-7 days post fertilisation) Blastocyst (6-7 days post fertilisation) Blastocyst (6-7 days post fertilisation) Blastocyst (6-7 days post fertilisation) Blastocyst (6-7 days post fertilisation) Blastocyst (6-7 days post fertilisation) Blastocyst (6-7 days post fertilisation) Blastocyst (6-7 days post fertilisation) Blastocyst (6-7 days post fertilisation) Blastocyst (6-7 days post fertilisation) Blastocyst (6-7 days post fertilisation) Blastocyst (6-7 days post fertilisation) Blastocyst (6-7 days post fertilisation) Blastocyst (6-7 days post fertilisation) Blastocyst (6-7 days post fertilisation) Blastocyst (6-7 days post fertilisation) Blastocyst (6-7 days post fertilisation) Blastocyst (6-7 days post fertilisation) Blastocyst (6-7 days post fertilisation) Blastocyst (6-7 days post fertilisation) Blastocyst (6-7 days post fertilisation) Blastocyst (6-7 days post fertilisation)
Source Cell:source Tissue Or OrganEarly embryonic tissueEarly embryonic tissueEarly embryonic tissueEarly embryonic tissueEarly embryonic tissueEarly embryonic tissueEarly embryonic tissueEarly embryonic tissueEarly embryonic tissueEarly embryonic tissueEarly embryonic tissueEarly embryonic tissueEarly embryonic tissueEarly embryonic tissueEarly embryonic tissueEarly embryonic tissueEarly embryonic tissueEarly embryonic tissueEarly embryonic tissueEarly embryonic tissueEarly embryonic tissueEarly embryonic tissueEarly embryonic tissue
Source Cell:source Cell Karyotype
Source Cell:cell Lineage
Source Cell:organism Genetic Information
Source Cell:health Status
Source Cell:source Provider
Technology:assay TechnologyRNA-SeqRNA-SeqRNA-SeqRNA-SeqRNA-SeqRNA-SeqRNA-SeqRNA-SeqRNA-SeqRNA-SeqRNA-SeqRNA-SeqRNA-SeqRNA-SeqRNA-SeqRNA-SeqRNA-SeqRNA-SeqRNA-SeqRNA-SeqRNA-SeqRNA-SeqRNA-Seq
Technology:assay Detection InstrumentationHiSeq 2000HiSeq 2000HiSeq 2000HiSeq 2000HiSeq 2000HiSeq 2000HiSeq 2000HiSeq 2000HiSeq 2000HiSeq 2000HiSeq 2000HiSeq 2000HiSeq 2000HiSeq 2000HiSeq 2000HiSeq 2000HiSeq 2000HiSeq 2000HiSeq 2000HiSeq 2000HiSeq 2000HiSeq 2000HiSeq 2000
Technology:assay Detection Instrument VendorIlluminaIlluminaIlluminaIlluminaIlluminaIlluminaIlluminaIlluminaIlluminaIlluminaIlluminaIlluminaIlluminaIlluminaIlluminaIlluminaIlluminaIlluminaIlluminaIlluminaIlluminaIlluminaIllumina
Technology:assessed MaterialpolyA RNApolyA RNApolyA RNApolyA RNApolyA RNApolyA RNApolyA RNApolyA RNApolyA RNApolyA RNApolyA RNApolyA RNApolyA RNApolyA RNApolyA RNApolyA RNApolyA RNApolyA RNApolyA RNApolyA RNApolyA RNApolyA RNApolyA RNA
Technology:source Cell Format
Technology:source Cell Preparation MethodSingle cell, dissociatedSingle cell, dissociatedSingle cell, dissociatedSingle cell, dissociatedSingle cell, dissociatedSingle cell, dissociatedSingle cell, dissociatedSingle cell, dissociatedSingle cell, dissociatedSingle cell, dissociatedSingle cell, dissociatedSingle cell, dissociatedSingle cell, dissociatedSingle cell, dissociatedSingle cell, dissociatedSingle cell, dissociatedSingle cell, dissociatedSingle cell, dissociatedSingle cell, dissociatedSingle cell, dissociatedSingle cell, dissociatedSingle cell, dissociatedSingle cell, dissociated
Technology:source Cell Identidication Method
Technology:source Cell Treatment
Data:data IdSRR1825955SRR1825956SRR1825957SRR1825958SRR1825959SRR1825960SRR1825962SRR1825963SRR1825964SRR1825966SRR1825967SRR1825968SRR1825969SRR1825970SRR2240604SRR2240605SRR2240606SRR2240607SRR2240608SRR2240609SRR2240610SRR2240611SRR2240612
Data:data TypeSequenceSequenceSequenceSequenceSequenceSequenceSequenceSequenceSequenceSequenceSequenceSequenceSequenceSequenceSequenceSequenceSequenceSequenceSequenceSequenceSequenceSequenceSequence
Data:data Processing Method
Data:data Processing Software And VersionTopHat2, HTSeq-countTopHat2, HTSeq-countTopHat2, HTSeq-countTopHat2, HTSeq-countTopHat2, HTSeq-countTopHat2, HTSeq-countTopHat2, HTSeq-countTopHat2, HTSeq-countTopHat2, HTSeq-countTopHat2, HTSeq-countTopHat2, HTSeq-countTopHat2, HTSeq-countTopHat2, HTSeq-countTopHat2, HTSeq-countTopHat2, HTSeq-countTopHat2, HTSeq-countTopHat2, HTSeq-countTopHat2, HTSeq-countTopHat2, HTSeq-countTopHat2, HTSeq-countTopHat2, HTSeq-countTopHat2, HTSeq-countTopHat2, HTSeq-count
Data:data Normalization MethodRPKM RPKM RPKM RPKM RPKM RPKM RPKM RPKM RPKM RPKM RPKM RPKM RPKM RPKM RPKM RPKM RPKM RPKM RPKM RPKM RPKM RPKM RPKM
Data:data Normalization Software Name And VersionDESeqDESeqDESeqDESeqDESeqDESeqDESeqDESeqDESeqDESeqDESeqDESeqDESeqDESeqDESeqDESeqDESeqDESeqDESeqDESeqDESeqDESeqDESeq
Data:data Analytical Software And Version
Data:reference Sequence SourceGRCh37.74GRCh37.74GRCh37.74GRCh37.74GRCh37.74GRCh37.74GRCh37.74GRCh37.74GRCh37.74GRCh37.74GRCh37.74GRCh37.74GRCh37.74GRCh37.74GRCh37.74GRCh37.74GRCh37.74GRCh37.74GRCh37.74GRCh37.74GRCh37.74GRCh37.74GRCh37.74
Data:genome Annotation Ref

SHOGoiN Cell Marker

Cell Type NameBlastocyst cellBlastocyst cellBlastocyst cell
Cell Type SubclassTrophoblast cellTrophoblast cellTrophoblast cell
SHOGoiN Cell Id9060700-7959060700-7959060700-795
Anatomical LocationGerm layerGerm layerGerm layer
Marker Molecule:nameHomeobox protein CDX-2 (CDX-3, Caudal-type homeobox protein 2, CDX2, CDX3)Keratin, type II cytoskeletal 7(Cytokeratin-7, CK-, Keratin-7, K7, Sarcolectin, Type-II keratin Kb7, KRT7, SCL)Tumor-associated calcium signal transducer 2 (Cell surface glycoprotein Trop-2, Membrane component chromosome 1 surface marker 1, Pancreatic carcinoma marker protein GA733-1, TACSTD2, GA733-1, M1S1, TROP2)
Marker Molecule:typeProteinProteinProtein
Marker Molecule:categoryTranscription factor
Subcellular LocalizationNucleusCytosolPlasma membrane
Uniprot IdQ99626P08729P09758
Gene Id
Source OrganismHumanHumanHuman
Referencehttps://www.rndsystems.com/research-area/trophoblast-stem-cell-markers11170831https://www.rndsystems.com/research-area/trophoblast-stem-cell-markers