Image : Cell Image ID 171

No. SHOGoiN cell id Image (Image ID) Title Sample Method Contact Morphologic Feature Note
18010000000000000000000-006

171

Immune system (blood):Macrophage:Human
LocationPenis
Age58
SexMale
RaceJapanese
Diseasesquamous cell carcinoma
Cause Of Death-
Date2009.11.25
Conditionnormal tissue from the resected cancerous fragment
Embedding MehtodParaffin
Staining MehtodHematoxylin
MicroscopeOLYMPUS DX50
CameraOLYMPUS DP20
Image Size (pixels)1200x1600
Resolution (ppi)72
magnification400
PersonKoji Yamanegi
E-mailyamanegi@hyo-med.ac.jp
Telephone0798-45-6432
Fax0798-45-6431
AffiliationDepartment of clinical pathology, Hyogo collage of medicine
Address1-1, Mukogawa, Nishinomiya, Hyogo
  Cell Nucleus   Nucleus/Cell
Area 2097.5 1300.5 Area ratio 0.620024
Circularity 0.654021 0.850611 Eccentricity1 0.0595199
Convex area 2287 1380 Eccentricity2 0.056419
Bending energy 2.86705 3.47826 Eccentricity3 0.0788611
Elliptic long axis 53.1736 43.9928 Eccentricity3 0.0788611
Inertia moment 705993 275912 Eccentricity4 0.0681929

SHOGoiN Cell Taxonomy

Homo sapiens & Mus musculus cell

No.Germ LayerDifferentiation StateSource AgeAnatomy IdCell Type IdAnatomy:body PartAnatomy:organAnatomy:sub-organAnatomy:tissue 1Anatomy:tissue 2Anatomy:tissue 3Anatomy:tissue 4Anatomy:tissue 5-1Anatomy:tissue 5-2Anatomy:tissue 5-3Anatomy:tissue 5-4Cell TypeSynonymCL IdUBERON IdImage IdTissue Image ID
14:Mesodermal4:Terminally differentiated6:Fetus 7:Postnatal 8:Neonatal 9:Infant 10:Juvenile 11:Adult8010000000000000000000006Immune system classBloodMacrophageCL:000023551, 137, 171, 311, 312, 313, 625, 626, 627, 659, 660

SHOGoiN Cell Marker

Cell Type NameImmune system/blood cellImmune system/blood cellImmune system/blood cell
Cell Type SubclassMacrophageMacrophageMacrophage
SHOGoiN Cell Id8010000000000000000000-0068010000000000000000000-0068010000000000000000000-006
Anatomical LocationBloodBloodBlood
Marker Molecule:nameC-X-C chemokine receptor type 4 (CXC-R4, CXCR-4, FB22, Fusin, HM89, LCR1, Leukocyte-derived seven transmembrane domain receptor, LESTR, Lipopolysaccharide-associated protein 3, LAP-3, LPS-associated protein 3, NPYRL, Stromal cell-derived factor 1 receptor, SDF-1 receptor, CD184, CXCR4)Stage-specific embryonic antigen 1 (SSEA1, CD15)Leukosialin (Galactoglycoprotein, CD43)
Marker Molecule:typeProteinProteinProtein
Marker Molecule:categoryCD moleculeCD moleculeCD molecule
Subcellular LocalizationPlasma membranePlasma membranePlasma membrane
Uniprot IdP61073P16150
Gene Id
Source OrganismHumanHumanHuman
Referencehttp://www.bdbiosciences.com/documents/cd_marker_handbook.pdfhttp://www.miltenyibiotec.com/en/products-and-services/macs-cell-separation/cell-separation-reagents/b-cells/cd43-microbeads-human.aspx

Image

SHOGoiN Cell Id8010000000000000000000-0068010000000000000000000-0068010000000000000000000-0068010000000000000000000-0068010000000000000000000-0068010000000000000000000-0068010000000000000000000-0068010000000000000000000-0068010000000000000000000-0068010000000000000000000-0068010000000000000000000-006
Image Id

51

137

171

311

312

313

625

626

627

659

660

TissueBoneImmune system (blood)Immune system (blood)Immune system (blood)Immune system (blood)Immune system (blood)Immune system (blood)Immune system (blood)Immune system (blood)Immune system (blood)Immune system (blood)
Cell TypeMacrophageMacrophageMacrophageMacrophageMacrophageMacrophageMacrophageMacrophageMacrophageMacrophageMacrophage
OrganismHumanHumanHumanHumanHumanHumanHumanHumanHumanHumanHuman
Cell Strain
LocationBoneMammary glandPenisLarge intestineLarge intestineLarge intestineImmune systemImmune systemImmune systemImmune systemImmune system
Karyotype
RaceJapaneseJapaneseJapaneseJapaneseJapaneseJapaneseJapaneseJapaneseJapaneseJapanese
Age44584949497979797979
SexfemaleMalemalemalemaleFemaleFemaleFemaleFemaleFemale
Medium
Serum
Other Chemical
Feeder
Other Treatment
Culture Period
Differentiaion
Self Renewal Ability
Onocogenic Transformation
Knock Out Gene
Knock In Gene
Diseasebreast cancersquamous cell carcinomacarcinoid of rectumcarcinoid of rectumcarcinoid of rectumAscending colon cancerAscending colon cancerAscending colon cancerAscending colon cancerAscending colon cancer
Cod
Shooting Date2005.8.122009.2.192009.11.252010.12.102010.12.102010.12.102013.08.012013.08.012013.08.012013.08.012013.08.01
Shooting Conditionnormal tissue or mild epithelial hyperplasianormal tissue from the resected cancerous fragmentnormal tissue or mild epithelial hyperplasianormal tissue or mild epithelial hyperplasianormal tissue or mild epithelial hyperplasia
EmbeddingParaffinParaffinParaffinParaffinParaffinParaffinParaffin
StainingHematoxylinHematoxylinHematoxylinHematoxylinHematoxylinHematoxylinHematoxylinHematoxylinHematoxylinHematoxylin
MicroscopeOLYMPUS DX50OLYMPUS DX50OLYMPUS DX50OLYMPUS DX50OLYMPUS DX50OLYMPUS DX50OLYMPUS DX50OLYMPUS DX50OLYMPUS DX50OLYMPUS DX50
CameraOLYMPUS DP20 OLYMPUS DP20 OLYMPUS DP20 OLYMPUS DP20 OLYMPUS DP20 OLYMPUS DP20 OLYMPUS DP20 OLYMPUS DP20 OLYMPUS DP20 OLYMPUS DP20
Image Size X1600160016001600160016001600160016001600
Image Size Y13921200120012001200120012001200120012001200
Resolution104072727272727272727272
Magnification400400400400400400400400400400
Contact PersonTakayuki MasudaKoji YamanegiKoji YamanegiKoji YamanegiKoji YamanegiKoji YamanegiKoji YamanegiKoji YamanegiKoji YamanegiKoji YamanegiKoji Yamanegi
Emailmasudat@mail.tains.tohoku.ac.jp yamanegi@hyo-med.ac.jpyamanegi@hyo-med.ac.jpyamanegi@hyo-med.ac.jpyamanegi@hyo-med.ac.jpyamanegi@hyo-med.ac.jpyamanegi@hyo-med.ac.jpyamanegi@hyo-med.ac.jpyamanegi@hyo-med.ac.jpyamanegi@hyo-med.ac.jpyamanegi@hyo-med.ac.jp
Telephone0798-45-64320798-45-64320798-45-64320798-45-64320798-45-64320798-45-64320798-45-64320798-45-64320798-45-64320798-45-6432
Fax0798-45-64310798-45-64310798-45-64310798-45-64310798-45-64310798-45-64310798-45-64310798-45-64310798-45-64310798-45-6431
AffiliationMicrobiology and Immunology, Department. of Medical Technology, School of Medicine, Tohoku UniversityDepartment of clinical pathology, Hyogo collage of medicineDepartment of clinical pathology, Hyogo collage of medicineDepartment of clinical pathology, Hyogo collage of medicineDepartment of clinical pathology, Hyogo collage of medicineDepartment of clinical pathology, Hyogo collage of medicineDepartment of clinical pathology, Hyogo collage of medicineDepartment of clinical pathology, Hyogo collage of medicineDepartment of clinical pathology, Hyogo collage of medicineDepartment of clinical pathology, Hyogo collage of medicineDepartment of clinical pathology, Hyogo collage of medicine
Zip Code980-8575663-8501663-8501663-8501663-8501663-8501663-8501663-8501663-8501663-8501663-8501
Address2-1, Seiryo-machi, Aoba-ku, Sendai, Miyagi1-1, Mukogawa, Nishinomiya, Hyogo1-1, Mukogawa, Nishinomiya, Hyogo1-1, Mukogawa, Nishinomiya, Hyogo1-1, Mukogawa, Nishinomiya, Hyogo1-1, Mukogawa, Nishinomiya, Hyogo1-1, Mukogawa, Nishinomiya, Hyogo1-1, Mukogawa, Nishinomiya, Hyogo1-1, Mukogawa, Nishinomiya, Hyogo1-1, Mukogawa, Nishinomiya, Hyogo1-1, Mukogawa, Nishinomiya, Hyogo
CountryJapanJapanJapanJapanJapanJapanJapanJapanJapanJapanJapan
Note
Nucleous Area640.55491300.5348.5493406.54548.52152.51120.53152.5565
Nucleous Circularity0.890.8501490.8506110.5137670.8762720.8536720.356170.5550650.456740.427280.48451
Nucleous Bending6932.473683.478260.8311691.828571.343281.50473.233164.408162.337163.60784
Nucleous Convex Area6615960213803935394495368242313503737728
Nucleous Ellipse Long Axis30.730.439643.992835.663225.462624.3847153.57769.038842.162498.019433.4329
Nucleous Inertia1.0150130.627591231775.63948326829.47.36E+068592592072062.31E+0655770.6
Cell Area34035413.52097.5177244326519.5365.51737755.5465.5393
Cell Circularity0.780.6230470.6540210.3805210.5036610.5018740.4866020.784050.872290.7522350.85315
Cell Bending2.052.411552.867054.212122.503553.410030.8148151.492962.696632.441561.25806
Cell Convex Area3660594822872282520673824191837814526427
Cell Ellipse Long Axis68.4596.637853.173676.943981.714293.838642.770162.407835.002428.978826.6317
Cell Inertia1.88E+064.98E+067059938236513289350697895044171.156275893770.137952.426252.9
Cell-nucleous Area Ratio0.190.1014130.6200240.196670.1112360.062351412.44461.239211.483126.772291.43766
Cell-nucleous Eccentricity10.150.1445260.05951990.06463520.07657190.2345994.771190.02804840.03627791.160080.0741046
Cell-nucleous Eccentricity20.140.1080350.0564190.0259930.06590240.2237881.242710.01602370.02856950.8459740.0531026
Cell-nucleous Eccentricity30.370.4535050.07886110.1493570.2152470.9844361.317340.02481330.02855350.5909920.0604981
Cell-nucleous Eccentricity40.320.3429840.06819290.05608020.2114930.8611960.3460850.01448460.02371780.2501070.0423001