Image : Cell Image ID 314

No.

SHOGoiN cell id

Image (Image ID)

Title

Sample

Method

Contact

Morphologic Feature

Note

1010201000500000000000-218

314

Cerebrum:Pyramidal cell:Human

Location	Cerebrum
Age	62
Sex	male
Race	Japanese
Disease	acute cardiac infarction
Cause Of Death	-
Date	2010.12.10
Condition	normal tissue or mild epithelial hyperplasia

Embedding Mehtod
Staining Mehtod	Hematoxylin
Microscope	OLYMPUS DX50
Camera	OLYMPUS DP20
Image Size (pixels)	1200x1600
Resolution (ppi)	72
magnification	400

Person	Koji Yamanegi
E-mail	yamanegi@hyo-med.ac.jp
Telephone	0798-45-6432
Fax	0798-45-6431
Affiliation	Department of clinical pathology, Hyogo collage of medicine
Address	1-1, Mukogawa, Nishinomiya, Hyogo

	Cell	Nucleus		Nucleus/Cell
Area	5428.5	1820.5	Area ratio	0.33536
Circularity	0.566807	0.888433	Eccentricity1	0.149677
Convex area	6325	1907	Eccentricity2	0.1369
Bending energy	2.43299	0.780142	Eccentricity3	0.274336
Elliptic long axis	90.3527	51.4295	Eccentricity3	0.274336
Inertia moment	5233340	534971	Eccentricity4	0.24051

SHOGoiN Cell Taxonomy

No.	Germ Layer	Differentiation State	Source Age	Anatomy Id	Cell Type Id	Anatomy:body Part	Anatomy:organ	Anatomy:sub-organ	Anatomy:tissue 1	Anatomy:tissue 2	Anatomy:tissue 3	Anatomy:tissue 4	Anatomy:tissue 5-1	Anatomy:tissue 5-2	Anatomy:tissue 5-3	Anatomy:tissue 5-4	Cell Type	Synonym	CL Id	UBERON Id	Image Id	Tissue Image ID
1	2 Ecotodermal	4 Terminally differentiated	7 Postnatal state 8 Neonatal state 9 Infant state 10 Juvenile 11 Adult	1010201000500000000000	218	Head	Brain	Cerebrum	Cerebral cortex		Cortical layer V (internal pyramidal layer)						Pyramidal cell		CL:0000598	UBERON:0005394	314, 315, 316, 317, 318, 319, 320

Image

SHOGoiN Cell Id	1010201000500000000000-218	1010201000500000000000-218	1010201000500000000000-218	1010201000500000000000-218	1010201000500000000000-218	1010201000500000000000-218	1010201000500000000000-218
Image Id	314	315	316	317	318	319	320
Tissue	Cerebrum	Cerebrum	Cerebrum	Cerebrum	Cerebrum	Cerebrum	Cerebrum
Cell Type	Pyramidal cell	Pyramidal cell	Pyramidal cell	Pyramidal cell	Pyramidal cell	Pyramidal cell	Pyramidal cell
Organism	Human	Human	Human	Human	Human	Human	Human
Cell Strain
Location	Cerebrum	Cerebrum	Cerebrum	Cerebrum	Cerebrum	Cerebrum	Cerebrum
Karyotype
Race	Japanese	Japanese	Japanese	Japanese	Japanese	Japanese	Japanese
Age	62	62	62	62	62	62	62
Sex	male	male	male	male	male	male	male
Medium
Serum
Other Chemical
Feeder
Other Treatment
Culture Period
Differentiaion
Self Renewal Ability
Onocogenic Transformation
Knock Out Gene
Knock In Gene
Disease	acute cardiac infarction	acute cardiac infarction	acute cardiac infarction	acute cardiac infarction	acute cardiac infarction	acute cardiac infarction	acute cardiac infarction
Cod
Shooting Date	2010.12.10	2010.12.10	2010.12.10	2010.12.10	2010.12.10	2010.12.10	2010.12.10
Shooting Condition	normal tissue or mild epithelial hyperplasia	normal tissue or mild epithelial hyperplasia	normal tissue or mild epithelial hyperplasia	normal tissue or mild epithelial hyperplasia	normal tissue or mild epithelial hyperplasia	normal tissue or mild epithelial hyperplasia	normal tissue or mild epithelial hyperplasia
Embedding
Staining	Hematoxylin	Hematoxylin	Hematoxylin	Hematoxylin	Hematoxylin	Hematoxylin	Hematoxylin
Microscope	OLYMPUS DX50	OLYMPUS DX50	OLYMPUS DX50	OLYMPUS DX50	OLYMPUS DX50	OLYMPUS DX50	OLYMPUS DX50
Camera	OLYMPUS DP20	OLYMPUS DP20	OLYMPUS DP20	OLYMPUS DP20	OLYMPUS DP20	OLYMPUS DP20	OLYMPUS DP20
Image Size X	1600	1600	1600	1600	1600	1600	1600
Image Size Y	1200	1200	1200	1200	1200	1200	1200
Resolution	72	72	72	72	72	72	72
Magnification	400	400	400	400	400	400	400
Contact Person	Koji Yamanegi	Koji Yamanegi	Koji Yamanegi	Koji Yamanegi	Koji Yamanegi	Koji Yamanegi	Koji Yamanegi
Email	yamanegi@hyo-med.ac.jp	yamanegi@hyo-med.ac.jp	yamanegi@hyo-med.ac.jp	yamanegi@hyo-med.ac.jp	yamanegi@hyo-med.ac.jp	yamanegi@hyo-med.ac.jp	yamanegi@hyo-med.ac.jp
Telephone	0798-45-6432	0798-45-6432	0798-45-6432	0798-45-6432	0798-45-6432	0798-45-6432	0798-45-6432
Fax	0798-45-6431	0798-45-6431	0798-45-6431	0798-45-6431	0798-45-6431	0798-45-6431	0798-45-6431
Affiliation	Department of clinical pathology, Hyogo collage of medicine	Department of clinical pathology, Hyogo collage of medicine	Department of clinical pathology, Hyogo collage of medicine	Department of clinical pathology, Hyogo collage of medicine	Department of clinical pathology, Hyogo collage of medicine	Department of clinical pathology, Hyogo collage of medicine	Department of clinical pathology, Hyogo collage of medicine
Zip Code	663-8501	663-8501	663-8501	663-8501	663-8501	663-8501	663-8501
Address	1-1, Mukogawa, Nishinomiya, Hyogo	1-1, Mukogawa, Nishinomiya, Hyogo	1-1, Mukogawa, Nishinomiya, Hyogo	1-1, Mukogawa, Nishinomiya, Hyogo	1-1, Mukogawa, Nishinomiya, Hyogo	1-1, Mukogawa, Nishinomiya, Hyogo	1-1, Mukogawa, Nishinomiya, Hyogo
Country	Japan	Japan	Japan	Japan	Japan	Japan	Japan
Note
Nucleous Area	1820.5	1046	970	1106.5	839.5	1382.5	917.5
Nucleous Circularity	0.888433	0.824991	0.87209	0.880865	0.836126	0.865977	0.844983
Nucleous Bending	0.780142	1.33333	1.54	2.24299	1.07216	2.45528	0.969697
Nucleous Convex Area	1907	1115	1032	1175	903	1465	980
Nucleous Ellipse Long Axis	51.4295	45.4985	38.1356	41.0823	39.6778	46.8863	42.2579
Nucleous Inertia	534971	193570	152356	199028	120969	313665	146823
Cell Area	5428.5	3782	2566	4102.5	3130	4743	2594
Cell Circularity	0.566807	0.31368	0.604622	0.385687	0.364729	0.351634	0.34815
Cell Bending	2.43299	2.59748	3.02083	2.3131	3.02128	1.48619	1.83065
Cell Convex Area	6325	4959	2967	5711	4445	6063	3530
Cell Ellipse Long Axis	90.3527	135.428	69.3314	90.8868	97.5364	138.624	97.207
Cell Inertia	5233340	4909680	1154070	3680590	2419890	7119660	1984370
Cell-nucleous Area Ratio	0.33536	0.276573	0.37802	0.269714	0.268211	0.291482	0.353701
Cell-nucleous Eccentricity1	0.149677	0.367825	0.294743	0.13844	0.177189	0.281309	0.294519
Cell-nucleous Eccentricity2	0.1369	0.112712	0.206513	0.110576	0.086996	0.102018	0.123876
Cell-nucleous Eccentricity3	0.274336	0.519858	0.440327	0.292007	0.314236	0.375332	0.433703
Cell-nucleous Eccentricity4	0.24051	0.335491	0.375445	0.244628	0.213855	0.301626	0.284955