Image : Cell Image ID 314
No. | SHOGoiN cell id | Image (Image ID) | Title | Sample | Method | Contact | Morphologic Feature | Note | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
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1 | 1010201000500000000000-218 | 314 | Cerebrum:Pyramidal cell:Human |
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SHOGoiN Cell Taxonomy
Homo sapiens & Mus musculus cell
No. | Germ Layer | Differentiation State | Source Age | Anatomy Id | Cell Type Id | Anatomy:body Part | Anatomy:organ | Anatomy:sub-organ | Anatomy:tissue 1 | Anatomy:tissue 2 | Anatomy:tissue 3 | Anatomy:tissue 4 | Anatomy:tissue 5-1 | Anatomy:tissue 5-2 | Anatomy:tissue 5-3 | Anatomy:tissue 5-4 | Cell Type | Synonym | CL Id | UBERON Id | Image Id | Tissue Image ID |
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1 | 2:Ectodermal | 4:Terminally differentiated | 7:Postnatal 8:Neonatal 9:Infant 10:Juvenile 11:Adult | 1010201000500000000000 | 218 | Head | Brain | Cerebrum | Cerebral cortex | Cortical layer V (internal pyramidal layer) | Pyramidal cell | CL:0000598 | UBERON:0005394 | 314, 315, 316, 317, 318, 319, 320 |
Image
SHOGoiN Cell Id | 1010201000500000000000-218 | 1010201000500000000000-218 | 1010201000500000000000-218 | 1010201000500000000000-218 | 1010201000500000000000-218 | 1010201000500000000000-218 | 1010201000500000000000-218 |
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Image Id | 314 | 315 | 316 | 317 | 318 | 319 | 320 |
Tissue | Cerebrum | Cerebrum | Cerebrum | Cerebrum | Cerebrum | Cerebrum | Cerebrum |
Cell Type | Pyramidal cell | Pyramidal cell | Pyramidal cell | Pyramidal cell | Pyramidal cell | Pyramidal cell | Pyramidal cell |
Organism | Human | Human | Human | Human | Human | Human | Human |
Cell Strain | |||||||
Location | Cerebrum | Cerebrum | Cerebrum | Cerebrum | Cerebrum | Cerebrum | Cerebrum |
Karyotype | |||||||
Race | Japanese | Japanese | Japanese | Japanese | Japanese | Japanese | Japanese |
Age | 62 | 62 | 62 | 62 | 62 | 62 | 62 |
Sex | male | male | male | male | male | male | male |
Medium | |||||||
Serum | |||||||
Other Chemical | |||||||
Feeder | |||||||
Other Treatment | |||||||
Culture Period | |||||||
Differentiaion | |||||||
Self Renewal Ability | |||||||
Onocogenic Transformation | |||||||
Knock Out Gene | |||||||
Knock In Gene | |||||||
Disease | acute cardiac infarction | acute cardiac infarction | acute cardiac infarction | acute cardiac infarction | acute cardiac infarction | acute cardiac infarction | acute cardiac infarction |
Cod | |||||||
Shooting Date | 2010.12.10 | 2010.12.10 | 2010.12.10 | 2010.12.10 | 2010.12.10 | 2010.12.10 | 2010.12.10 |
Shooting Condition | normal tissue or mild epithelial hyperplasia | normal tissue or mild epithelial hyperplasia | normal tissue or mild epithelial hyperplasia | normal tissue or mild epithelial hyperplasia | normal tissue or mild epithelial hyperplasia | normal tissue or mild epithelial hyperplasia | normal tissue or mild epithelial hyperplasia |
Embedding | |||||||
Staining | Hematoxylin | Hematoxylin | Hematoxylin | Hematoxylin | Hematoxylin | Hematoxylin | Hematoxylin |
Microscope | OLYMPUS DX50 | OLYMPUS DX50 | OLYMPUS DX50 | OLYMPUS DX50 | OLYMPUS DX50 | OLYMPUS DX50 | OLYMPUS DX50 |
Camera | OLYMPUS DP20 | OLYMPUS DP20 | OLYMPUS DP20 | OLYMPUS DP20 | OLYMPUS DP20 | OLYMPUS DP20 | OLYMPUS DP20 |
Image Size X | 1600 | 1600 | 1600 | 1600 | 1600 | 1600 | 1600 |
Image Size Y | 1200 | 1200 | 1200 | 1200 | 1200 | 1200 | 1200 |
Resolution | 72 | 72 | 72 | 72 | 72 | 72 | 72 |
Magnification | 400 | 400 | 400 | 400 | 400 | 400 | 400 |
Contact Person | Koji Yamanegi | Koji Yamanegi | Koji Yamanegi | Koji Yamanegi | Koji Yamanegi | Koji Yamanegi | Koji Yamanegi |
yamanegi@hyo-med.ac.jp | yamanegi@hyo-med.ac.jp | yamanegi@hyo-med.ac.jp | yamanegi@hyo-med.ac.jp | yamanegi@hyo-med.ac.jp | yamanegi@hyo-med.ac.jp | yamanegi@hyo-med.ac.jp | |
Telephone | 0798-45-6432 | 0798-45-6432 | 0798-45-6432 | 0798-45-6432 | 0798-45-6432 | 0798-45-6432 | 0798-45-6432 |
Fax | 0798-45-6431 | 0798-45-6431 | 0798-45-6431 | 0798-45-6431 | 0798-45-6431 | 0798-45-6431 | 0798-45-6431 |
Affiliation | Department of clinical pathology, Hyogo collage of medicine | Department of clinical pathology, Hyogo collage of medicine | Department of clinical pathology, Hyogo collage of medicine | Department of clinical pathology, Hyogo collage of medicine | Department of clinical pathology, Hyogo collage of medicine | Department of clinical pathology, Hyogo collage of medicine | Department of clinical pathology, Hyogo collage of medicine |
Zip Code | 663-8501 | 663-8501 | 663-8501 | 663-8501 | 663-8501 | 663-8501 | 663-8501 |
Address | 1-1, Mukogawa, Nishinomiya, Hyogo | 1-1, Mukogawa, Nishinomiya, Hyogo | 1-1, Mukogawa, Nishinomiya, Hyogo | 1-1, Mukogawa, Nishinomiya, Hyogo | 1-1, Mukogawa, Nishinomiya, Hyogo | 1-1, Mukogawa, Nishinomiya, Hyogo | 1-1, Mukogawa, Nishinomiya, Hyogo |
Country | Japan | Japan | Japan | Japan | Japan | Japan | Japan |
Note | |||||||
Nucleous Area | 1820.5 | 1046 | 970 | 1106.5 | 839.5 | 1382.5 | 917.5 |
Nucleous Circularity | 0.888433 | 0.824991 | 0.87209 | 0.880865 | 0.836126 | 0.865977 | 0.844983 |
Nucleous Bending | 0.780142 | 1.33333 | 1.54 | 2.24299 | 1.07216 | 2.45528 | 0.969697 |
Nucleous Convex Area | 1907 | 1115 | 1032 | 1175 | 903 | 1465 | 980 |
Nucleous Ellipse Long Axis | 51.4295 | 45.4985 | 38.1356 | 41.0823 | 39.6778 | 46.8863 | 42.2579 |
Nucleous Inertia | 534971 | 193570 | 152356 | 199028 | 120969 | 313665 | 146823 |
Cell Area | 5428.5 | 3782 | 2566 | 4102.5 | 3130 | 4743 | 2594 |
Cell Circularity | 0.566807 | 0.31368 | 0.604622 | 0.385687 | 0.364729 | 0.351634 | 0.34815 |
Cell Bending | 2.43299 | 2.59748 | 3.02083 | 2.3131 | 3.02128 | 1.48619 | 1.83065 |
Cell Convex Area | 6325 | 4959 | 2967 | 5711 | 4445 | 6063 | 3530 |
Cell Ellipse Long Axis | 90.3527 | 135.428 | 69.3314 | 90.8868 | 97.5364 | 138.624 | 97.207 |
Cell Inertia | 5233340 | 4909680 | 1154070 | 3680590 | 2419890 | 7119660 | 1984370 |
Cell-nucleous Area Ratio | 0.33536 | 0.276573 | 0.37802 | 0.269714 | 0.268211 | 0.291482 | 0.353701 |
Cell-nucleous Eccentricity1 | 0.149677 | 0.367825 | 0.294743 | 0.13844 | 0.177189 | 0.281309 | 0.294519 |
Cell-nucleous Eccentricity2 | 0.1369 | 0.112712 | 0.206513 | 0.110576 | 0.086996 | 0.102018 | 0.123876 |
Cell-nucleous Eccentricity3 | 0.274336 | 0.519858 | 0.440327 | 0.292007 | 0.314236 | 0.375332 | 0.433703 |
Cell-nucleous Eccentricity4 | 0.24051 | 0.335491 | 0.375445 | 0.244628 | 0.213855 | 0.301626 | 0.284955 |