Image : Cell Image ID 37
No. | SHOGoiN cell id | Image (Image ID) | Title | Sample | Method | Contact | Morphologic Feature | Note | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
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1 | 8010000000000000000000-005 | 37 | Immune system (blood):Lymphocyte:Human |
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SHOGoiN Cell Taxonomy
Homo sapiens & Mus musculus cell
No. | Germ Layer | Differentiation State | Source Age | Anatomy Id | Cell Type Id | Anatomy:body Part | Anatomy:organ | Anatomy:sub-organ | Anatomy:tissue 1 | Anatomy:tissue 2 | Anatomy:tissue 3 | Anatomy:tissue 4 | Anatomy:tissue 5-1 | Anatomy:tissue 5-2 | Anatomy:tissue 5-3 | Anatomy:tissue 5-4 | Cell Type | Synonym | CL Id | UBERON Id | Image Id | Tissue Image ID |
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1 | 4:Mesodermal | 4:Terminally differentiated | 6:Fetus 7:Postnatal 8:Neonatal 9:Infant 10:Juvenile 11:Adult | 8010000000000000000000 | 005 | Immune system class | Blood | Lymphocyte | CL:0000542 | 37, 53, 78, 157, 158, 159, 160, 161, 402, 414, 426, 456, 457, 499, 509, 510, 517, 527, 533, 599, 600, 601 |
Image
SHOGoiN Cell Id | 8010000000000000000000-005 | 8010000000000000000000-005 | 8010000000000000000000-005 | 8010000000000000000000-005 | 8010000000000000000000-005 | 8010000000000000000000-005 | 8010000000000000000000-005 | 8010000000000000000000-005 | 8010000000000000000000-005 | 8010000000000000000000-005 | 8010000000000000000000-005 | 8010000000000000000000-005 | 8010000000000000000000-005 | 8010000000000000000000-005 | 8010000000000000000000-005 | 8010000000000000000000-005 | 8010000000000000000000-005 | 8010000000000000000000-005 | 8010000000000000000000-005 | 8010000000000000000000-005 | 8010000000000000000000-005 | 8010000000000000000000-005 |
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Image Id | 37 | 53 | 78 | 157 | 158 | 159 | 160 | 161 | 402 | 414 | 426 | 456 | 457 | 499 | 509 | 510 | 517 | 527 | 533 | 599 | 600 | 601 |
Tissue | Immune system (blood) | Bone | Immune system (blood) | Immune system (blood) | Immune system (blood) | Immune system (blood) | Immune system (blood) | Immune system (blood) | Immune system (blood) | Immune system (blood) | Immune system (blood) | Immune system (blood) | Immune system (blood) | Immune system (blood) | Immune system (blood) | Immune system (blood) | Immune system (blood) | Immune system (blood) | Immune system (blood) | Immune system (blood) | Immune system (blood) | Immune system (blood) |
Cell Type | Lymphocyte | Lymphocyte | Lymphocyte | Lymphocyte | Lymphocyte | Lymphocyte | Lymphocyte | Lymphocyte | Lymphocyte | Lymphocyte | Lymphocyte | Lymphocyte | Lymphocyte | Lymphocyte | Lymphocyte | Lymphocyte | Lymphocyte | Lymphocyte | Lymphocyte | Lymphocyte | Lymphocyte | Lymphocyte |
Organism | Human | Human | Human | Human | Human | Human | Human | Human | Human | Human | Human | Human | Human | Human | Human | Human | Human | Human | Human | Human | Human | Human |
Cell Strain | ||||||||||||||||||||||
Location | Small intestine | Bone | Stomach | Ureter | Ureter | Ureter | Ureter | Ureter | Large intestine | Nose | Stomach | Stomach | Stomach | Mouth | Mouth | Mouth | Nose | Immune system | Immune system | Immune system | Immune system | Immune system |
Karyotype | ||||||||||||||||||||||
Race | Japanese | Japanese | Japanese | Japanese | Japanese | Japanese | Japanese | Japanese | Japanese | Japanese | Japanese | Japanese | Japanese | Japanese | Japanese | Japanese | Japanese | Japanese | Japanese | Japanese | ||
Age | 74 | 74 | 74 | 74 | 74 | 74 | 68 | 40 | 68 | 68 | 68 | 61 | 68 | 68 | 31 | 79 | 79 | 79 | 79 | 79 | ||
Sex | Male | female | female | female | female | female | male | female | male | male | male | male | female | female | female | Female | Female | Female | Female | Female | ||
Medium | ||||||||||||||||||||||
Serum | ||||||||||||||||||||||
Other Chemical | ||||||||||||||||||||||
Feeder | ||||||||||||||||||||||
Other Treatment | ||||||||||||||||||||||
Culture Period | ||||||||||||||||||||||
Differentiaion | ||||||||||||||||||||||
Self Renewal Ability | ||||||||||||||||||||||
Onocogenic Transformation | ||||||||||||||||||||||
Knock Out Gene | ||||||||||||||||||||||
Knock In Gene | ||||||||||||||||||||||
Disease | stomach cancer colitis or Crohn's disease | bladder cancer | bladder cancer | bladder cancer | bladder cancer | bladder cancer | appendicitis | granuloma teleangiectaticum | gastric cancer | gastric cancer | gastric cancer | Mild epithelial hyperplasia with parakeratosis | Pleomorphic adenoma | Pleomorphic adenoma | Jaw deformity | Ascending colon cancer | Ascending colon cancer | Ascending colon cancer | Ascending colon cancer | Ascending colon cancer | ||
Cod | ||||||||||||||||||||||
Shooting Date | 2008.1.5 | 2005.8.12 | 2008.9.6 | 2008.9.6 | 2008.9.6 | 2008.9.6 | 2008.9.6 | 2011.4.8 | 2011.9.22 | 2011.9.22 | 2011.9.22 | 2011.9.22 | 2011.9.22 | 2011.9.22 | 2011.9.22 | 2011.9.22 | 2013.08.01 | 2013.08.01 | 2013.08.01 | 2013.08.01 | 2013.08.01 | |
Shooting Condition | tissue from normal or mild esophagitis | normal tissue or mild epithelial hyperplasia | normal tissue or mild epithelial hyperplasia | normal tissue or mild epithelial hyperplasia | normal tissue or mild epithelial hyperplasia | normal tissue or mild epithelial hyperplasia | normal or mild epithelium hyperplasia | normal or mild columnar epithelium hyperplasia | normal or mild epithelium hyperplasia | normal or mild epithelium hyperplasia | normal or mild epithelium hyperplasia | normal or mild epithelium hyperplasia | normal | normal | normal or mild epithelium hyperplasia | |||||||
Embedding | Paraffin | Paraffin | Paraffin | Paraffin | Paraffin | Paraffin | Paraffin | paraffin | paraffin | paraffin | paraffin | paraffin | paraffin | paraffin | paraffin | paraffin | Paraffin | Paraffin | Paraffin | Paraffin | Paraffin | |
Staining | Hematoxylin | Hematoxylin | Hematoxylin | Hematoxylin | Hematoxylin | Hematoxylin | Hematoxylin | hematoxylin | hematoxylin | hematoxylin | hematoxylin | hematoxylin | hematoxylin | hematoxylin | hematoxylin | hematoxylin | Hematoxylin | Hematoxylin | Hematoxylin | Hematoxylin | Hematoxylin | |
Microscope | OLYMPUS DX50 | OLYMPUS DX51 | OLYMPUS DX50 | OLYMPUS DX50 | OLYMPUS DX50 | OLYMPUS DX50 | OLYMPUS DX50 | OLYMPUS BX50 | OLYMPUS BX50 | OLYMPUS BX50 | OLYMPUS BX50 | OLYMPUS BX50 | OLYMPUS BX50 | OLYMPUS BX50 | OLYMPUS BX50 | OLYMPUS BX50 | OLYMPUS DX50 | OLYMPUS DX50 | OLYMPUS DX50 | OLYMPUS DX50 | OLYMPUS DX50 | |
Camera | OLYMPUS DP20 | OLYMPUS DP21 | OLYMPUS DP20 | OLYMPUS DP20 | OLYMPUS DP20 | OLYMPUS DP20 | OLYMPUS DP20 | OLYMPUS DP20 | OLYMPUS DP20 | OLYMPUS DP20 | OLYMPUS DP20 | OLYMPUS DP20 | OLYMPUS DP20 | OLYMPUS DP20 | OLYMPUS DP20 | OLYMPUS DP20 | OLYMPUS DP20 | OLYMPUS DP20 | OLYMPUS DP20 | OLYMPUS DP20 | OLYMPUS DP20 | |
Image Size X | 1600 | 1600 | 1600 | 1600 | 1600 | 1600 | 1600 | 1600 | 1600 | 1600 | 1600 | 1600 | 1600 | 1600 | 1600 | 1600 | 1600 | 1600 | 1600 | 1600 | 1600 | |
Image Size Y | 1200 | 1392 | 1200 | 1200 | 1200 | 1200 | 1200 | 1200 | 1200 | 1200 | 1200 | 1200 | 1200 | 1200 | 1200 | 1200 | 1200 | 1200 | 1200 | 1200 | 1200 | 1200 |
Resolution | 72 | 1040 | 72 | 72 | 72 | 72 | 72 | 72 | 72 | 72 | 72 | 72 | 72 | 72 | 72 | 72 | 72 | 72 | 72 | 72 | 72 | 72 |
Magnification | 400 | 400 | 400 | 400 | 400 | 400 | 400 | 400 | 400 | 400 | 400 | 400 | 400 | 400 | 400 | 400 | 400 | 400 | 400 | 400 | 400 | |
Contact Person | Koji Yamanegi | Takayuki Masuda | Koji Yamanegi | Koji Yamanegi | Koji Yamanegi | Koji Yamanegi | Koji Yamanegi | Koji Yamanegi | Koji Yamanegi | Koji Yamanegi | Koji Yamanegi | Koji Yamanegi | Koji Yamanegi | Koji Yamanegi | Koji Yamanegi | Koji Yamanegi | Koji Yamanegi | Koji Yamanegi | Koji Yamanegi | Koji Yamanegi | Koji Yamanegi | Koji Yamanegi |
yamanegi@hyo-med.ac.jp | masudat@mail.tains.tohoku.ac.jp | yamanegi@hyo-med.ac.jp | yamanegi@hyo-med.ac.jp | yamanegi@hyo-med.ac.jp | yamanegi@hyo-med.ac.jp | yamanegi@hyo-med.ac.jp | yamanegi@hyo-med.ac.jp | yamanegi@hyo-med.ac.jp | yamanegi@hyo-med.ac.jp | yamanegi@hyo-med.ac.jp | yamanegi@hyo-med.ac.jp | yamanegi@hyo-med.ac.jp | yamanegi@hyo-med.ac.jp | yamanegi@hyo-med.ac.jp | yamanegi@hyo-med.ac.jp | yamanegi@hyo-med.ac.jp | yamanegi@hyo-med.ac.jp | yamanegi@hyo-med.ac.jp | yamanegi@hyo-med.ac.jp | yamanegi@hyo-med.ac.jp | yamanegi@hyo-med.ac.jp | |
Telephone | 0798-45-6432 | 0798-45-6432 | 0798-45-6432 | 0798-45-6432 | 0798-45-6432 | 0798-45-6432 | 0798-45-6432 | 0798-45-6432 | 0798-45-6432 | 0798-45-6432 | 0798-45-6432 | 0798-45-6432 | 0798-45-6432 | 0798-45-6432 | 0798-45-6432 | 0798-45-6432 | 0798-45-6432 | 0798-45-6432 | 0798-45-6432 | 0798-45-6432 | 0798-45-6432 | |
Fax | 0798-45-6431 | 0798-45-6431 | 0798-45-6431 | 0798-45-6431 | 0798-45-6431 | 0798-45-6431 | 0798-45-6431 | 0798-45-6431 | 0798-45-6431 | 0798-45-6431 | 0798-45-6431 | 0798-45-6431 | 0798-45-6431 | 0798-45-6431 | 0798-45-6431 | 0798-45-6431 | 0798-45-6431 | 0798-45-6431 | 0798-45-6431 | 0798-45-6431 | 0798-45-6431 | |
Affiliation | Department of clinical pathology, Hyogo collage of medicine | Microbiology and Immunology, Department. of Medical Technology, School of Medicine, Tohoku University | Department of clinical pathology, Hyogo collage of medicine | Department of clinical pathology, Hyogo collage of medicine | Department of clinical pathology, Hyogo collage of medicine | Department of clinical pathology, Hyogo collage of medicine | Department of clinical pathology, Hyogo collage of medicine | Department of clinical pathology, Hyogo collage of medicine | Department of clinical pathology, Hyogo collage of medicine | Department of clinical pathology, Hyogo collage of medicine | Department of clinical pathology, Hyogo collage of medicine | Department of clinical pathology, Hyogo collage of medicine | Department of clinical pathology, Hyogo collage of medicine | Department of clinical pathology, Hyogo collage of medicine | Department of clinical pathology, Hyogo collage of medicine | Department of clinical pathology, Hyogo collage of medicine | Department of clinical pathology, Hyogo collage of medicine | Department of clinical pathology, Hyogo collage of medicine | Department of clinical pathology, Hyogo collage of medicine | Department of clinical pathology, Hyogo collage of medicine | Department of clinical pathology, Hyogo collage of medicine | Department of clinical pathology, Hyogo collage of medicine |
Zip Code | 663-8501 | 980-8575 | 663-8501 | 663-8501 | 663-8501 | 663-8501 | 663-8501 | 663-8501 | 663-8501 | 663-8501 | 663-8501 | 663-8501 | 663-8501 | 663-8501 | 663-8501 | 663-8501 | 663-8501 | 663-8501 | 663-8501 | 663-8501 | 663-8501 | 663-8501 |
Address | 1-1, Mukogawa, Nishinomiya, Hyogo | 2-1, Seiryo-machi, Aoba-ku, Sendai, Miyagi | 1-1, Mukogawa, Nishinomiya, Hyogo | 1-1, Mukogawa, Nishinomiya, Hyogo | 1-1, Mukogawa, Nishinomiya, Hyogo | 1-1, Mukogawa, Nishinomiya, Hyogo | 1-1, Mukogawa, Nishinomiya, Hyogo | 1-1, Mukogawa, Nishinomiya, Hyogo | 1-1, Mukogawa, Nishinomiya, Hyogo | 1-1, Mukogawa, Nishinomiya, Hyogo | 1-1, Mukogawa, Nishinomiya, Hyogo | 1-1, Mukogawa, Nishinomiya, Hyogo | 1-1, Mukogawa, Nishinomiya, Hyogo | 1-1, Mukogawa, Nishinomiya, Hyogo | 1-1, Mukogawa, Nishinomiya, Hyogo | 1-1, Mukogawa, Nishinomiya, Hyogo | 1-1, Mukogawa, Nishinomiya, Hyogo | 1-1, Mukogawa, Nishinomiya, Hyogo | 1-1, Mukogawa, Nishinomiya, Hyogo | 1-1, Mukogawa, Nishinomiya, Hyogo | 1-1, Mukogawa, Nishinomiya, Hyogo | 1-1, Mukogawa, Nishinomiya, Hyogo |
Country | Japan | Japan | Japan | Japan | Japan | Japan | Japan | Japan | Japan | Japan | Japan | Japan | Japan | Japan | Japan | Japan | Japan | Japan | Japan | Japan | Japan | Japan |
Note | ||||||||||||||||||||||
Nucleous Area | 373 | 365.5 | 433 | 270.5 | 468 | 507 | 591 | 376.5 | 214.5 | 258.5 | 260 | 418 | 224 | 273.5 | 374.5 | 290.5 | 252 | 854.5 | 806 | 918.5 | 442 | 870.5 |
Nucleous Circularity | 0.87 | 0.81 | 0.88 | 0.892954 | 0.875897 | 0.521142 | 0.74355 | 0.87925 | 0.868863 | 0.862912 | 0.884733 | 0.632746 | 0.852689 | 0.847052 | 0.776694 | 0.710129 | 0.881377 | 0.572503 | 0.325836 | 0.636992 | 0.411179 | 0.444057 |
Nucleous Bending | 415 | 410 | 478 | 2.22642 | 0.388889 | 2.38298 | 1.08889 | 2.79365 | 1.61702 | 2.54902 | 1.52 | 1.60976 | 1.52 | 2.47273 | 2.73846 | 1.26984 | 1.52 | 2.48696 | 1.375 | 2.1982 | 4.18367 | 3.03704 |
Nucleous Convex Area | 22624.1 | 22916.4 | 30589.3 | 300 | 509 | 635 | 651 | 413 | 244 | 293 | 292 | 474 | 255 | 309 | 419 | 336 | 284 | 999 | 1181 | 1042 | 589 | 1091 |
Nucleous Ellipse Long Axis | 23.78 | 25.74 | 26.05 | 20.6788 | 27.6531 | 28.4076 | 38.4505 | 23.2979 | 19.3364 | 19.6253 | 19.0659 | 38.2463 | 20.0681 | 19.2729 | 28.4128 | 27.8815 | 19.6162 | 36.1317 | 56.1729 | 44.0009 | 26.1236 | 36.9552 |
Nucleous Inertia | 1.26 | 0.62 | 1.21 | 11979.4 | 36398.3 | 42791.5 | 68345.3 | 22948.9 | 7688.87 | 10797.1 | 10895.4 | 43401.5 | 8491.83 | 12023.4 | 26290.6 | 17645.4 | 10342.9 | 118673 | 230594 | 153074 | 33823.1 | 126970 |
Cell Area | 872 | 1322.5 | 757 | 496 | 782.5 | 507 | 1566.5 | 691.5 | 214.5 | 365 | 403 | 1077.5 | 660 | 592 | 1403 | 1416.5 | 476.5 | 228.5 | 343 | 183.5 | 203 | 410.5 |
Cell Circularity | 0.61 | 0.52 | 0.41 | 0.42195 | 0.657141 | 0.521142 | 0.560303 | 0.678673 | 0.868863 | 0.626003 | 0.582335 | 0.549651 | 0.735018 | 0.478327 | 0.635901 | 0.523435 | 0.351775 | 0.914272 | 0.513728 | 0.862763 | 0.854841 | 0.826296 |
Cell Bending | 3.79 | 2.08 | 2.92 | 4.72 | 3.25234 | 2.38298 | 2.83436 | 3.46392 | 1.61702 | 3 | 4.35 | 3.74815 | 2.22727 | 2.01923 | 3.34286 | 2.52903 | 4.55856 | 0.285714 | 0.55 | 1.72093 | 1.5 | 1.37313 |
Cell Convex Area | 1014 | 1540 | 999 | 645 | 916 | 635 | 1803 | 790 | 256 | 403 | 209 | 229 | 458 | |||||||||
Cell Ellipse Long Axis | 40.81 | 51.38 | 39.24 | 29.7407 | 35.2814 | 28.4076 | 52.1175 | 30.4182 | 19.3364 | 22.2554 | 24.4413 | 55.8904 | 31.9888 | 29.5902 | 47.0745 | 50.0291 | 27.5666 | 18.9525 | 38.6207 | 15.9789 | 18.9851 | 26.351 |
Cell Inertia | 133146 | 311737 | 103158 | 42611.4 | 102388 | 42791.5 | 412236 | 77347.9 | 7688.87 | 21703.1 | 26759.8 | 257750 | 71803.6 | 57524.6 | 325012 | 345844 | 38700 | 8529.07 | 35696.4 | 5465.35 | 6952.02 | 28227.4 |
Cell-nucleous Area Ratio | 0.43 | 0.28 | 0.57 | 0.545363 | 0.598083 | 0.686391 | 0.377274 | 0.544469 | 1 | 0.708219 | 0.645161 | 0.387935 | 0.339394 | 0.461993 | 0.266928 | 0.205083 | 0.528856 | 3.73961 | 2.34985 | 5.00545 | 2.17734 | 2.12058 |
Cell-nucleous Eccentricity1 | 0.15 | 0.03 | 0.04 | 0.0445715 | 0.0701972 | 0 | 0.0773152 | 0.0687825 | 0 | 0 | 0 | 0.0904936 | 0.0534197 | 0.0860518 | 0.073569 | 0.246546 | 0.096392 | 0.268229 | 0.269857 | 0.213025 | 0.163494 | 0.100176 |
Cell-nucleous Eccentricity2 | 0.1 | 0.02 | 0.03 | 0.033624 | 0.0566871 | 0 | 0.0575622 | 0.06575 | 0 | 0 | 0 | 0.0400081 | 0.0442097 | 0.075568 | 0.0600841 | 0.181002 | 0.081115 | 0.217549 | 0.0818803 | 0.197904 | 0.11778 | 0.0758984 |
Cell-nucleous Eccentricity3 | 0.21 | 0.05 | 0.05 | 0.0597851 | 0.0925772 | 0 | 0.151588 | 0.0965456 | 0 | 0 | 0 | 0.157408 | 0.0990607 | 0.123006 | 0.166358 | 0.675073 | 0.135309 | 0.133921 | 0.146849 | 0.118068 | 0.099341 | 0.0648008 |
Cell-nucleous Eccentricity4 | 0.17 | 0.04 | 0.04 | 0.0483587 | 0.0723247 | 0 | 0.0780223 | 0.0858445 | 0 | 0 | 0 | 0.058465 | 0.0704708 | 0.116021 | 0.0995477 | 0.324782 | 0.113991 | 0.114113 | 0.0562954 | 0.0718685 | 0.0855957 | 0.0541196 |