Image : Cell Image ID 464

No.

SHOGoiN cell id

Image (Image ID)

Title

Sample

Method

Contact

Morphologic Feature

Note

2010301010400000000000-228

464

Pharynx:Serous cell:Human

Location	Pharynx
Age	81
Sex	male
Race	Japanese
Disease	squamous cell carcinoma
Cause Of Death	-
Date	2011.9.22
Condition	normal or mild epithelium hyperplasia

Embedding Mehtod	paraffin
Staining Mehtod	hematoxylin
Microscope	OLYMPUS BX50
Camera	OLYMPUS DP20
Image Size (pixels)	1200x1600
Resolution (ppi)	72
magnification	400

Person	Koji Yamanegi
E-mail	yamanegi@hyo-med.ac.jp
Telephone	0798-45-6432
Fax	0798-45-6431
Affiliation	Department of clinical pathology, Hyogo collage of medicine
Address	1-1, Mukogawa, Nishinomiya, Hyogo

	Cell	Nucleus		Nucleus/Cell
Area	2578	468	Area ratio	0.181536
Circularity	0.433978	0.73027	Eccentricity1	0.350979
Convex area		519	Eccentricity2	0.219324
Bending energy	3.0177	4.56757	Eccentricity3	0.942379
Elliptic long axis	73.6602	34.9482	Eccentricity3	0.942379
Inertia moment	1253860	44270.2	Eccentricity4	0.462269

SHOGoiN Cell Taxonomy

No.	Germ Layer	Differentiation State	Source Age	Anatomy Id	Cell Type Id	Anatomy:body Part	Anatomy:organ	Anatomy:sub-organ	Anatomy:tissue 1	Anatomy:tissue 2	Anatomy:tissue 3	Anatomy:tissue 4	Anatomy:tissue 5-1	Anatomy:tissue 5-2	Anatomy:tissue 5-3	Anatomy:tissue 5-4	Cell Type	Synonym	CL Id	UBERON Id	Image Id	Tissue Image ID
1	3 Endodermal	4 Terminally differentiated	6 Fetus state 7 Postnatal state 8 Neonatal state 9 Infant state 10 Juvenile 11 Adult	2010301010400000000000	228	Neck	Pharynx	Nasopharynx	Mucosa	Lamina propria	Pharyngeal gland						Serous cell		CL:0000313		462, 463, 464, 465, 466

Image

SHOGoiN Cell Id	2010301010400000000000-228	2010301010400000000000-228	2010301010400000000000-228	2010301010400000000000-228	2010301010400000000000-228
Image Id	462	463	464	465	466
Tissue	Pharynx	Pharynx	Pharynx	Pharynx	Pharynx
Cell Type	Serous cell	Serous cell	Serous cell	Serous cell	Serous cell
Organism	Human	Human	Human	Human	Human
Cell Strain
Location	Pharynx	Pharynx	Pharynx	Pharynx	Pharynx
Karyotype
Race	Japanese	Japanese	Japanese	Japanese	Japanese
Age	81	81	81	81	81
Sex	male	male	male	male	male
Medium
Serum
Other Chemical
Feeder
Other Treatment
Culture Period
Differentiaion
Self Renewal Ability
Onocogenic Transformation
Knock Out Gene
Knock In Gene
Disease	squamous cell carcinoma	squamous cell carcinoma	squamous cell carcinoma	squamous cell carcinoma	squamous cell carcinoma
Cod
Shooting Date	2011.9.22	2011.9.22	2011.9.22	2011.9.22	2011.9.22
Shooting Condition	normal or mild epithelium hyperplasia	normal or mild epithelium hyperplasia	normal or mild epithelium hyperplasia	normal or mild epithelium hyperplasia	normal or mild epithelium hyperplasia
Embedding	paraffin	paraffin	paraffin	paraffin	paraffin
Staining	hematoxylin	hematoxylin	hematoxylin	hematoxylin	hematoxylin
Microscope	OLYMPUS BX50	OLYMPUS BX50	OLYMPUS BX50	OLYMPUS BX50	OLYMPUS BX50
Camera	OLYMPUS DP20	OLYMPUS DP20	OLYMPUS DP20	OLYMPUS DP20	OLYMPUS DP20
Image Size X	1600	1600	1600	1600	1600
Image Size Y	1200	1200	1200	1200	1200
Resolution	72	72	72	72	72
Magnification	400	400	400	400	400
Contact Person	Koji Yamanegi	Koji Yamanegi	Koji Yamanegi	Koji Yamanegi	Koji Yamanegi
Email	yamanegi@hyo-med.ac.jp	yamanegi@hyo-med.ac.jp	yamanegi@hyo-med.ac.jp	yamanegi@hyo-med.ac.jp	yamanegi@hyo-med.ac.jp
Telephone	0798-45-6432	0798-45-6432	0798-45-6432	0798-45-6432	0798-45-6432
Fax	0798-45-6431	0798-45-6431	0798-45-6431	0798-45-6431	0798-45-6431
Affiliation	Department of clinical pathology, Hyogo collage of medicine	Department of clinical pathology, Hyogo collage of medicine	Department of clinical pathology, Hyogo collage of medicine	Department of clinical pathology, Hyogo collage of medicine	Department of clinical pathology, Hyogo collage of medicine
Zip Code	663-8501	663-8501	663-8501	663-8501	663-8501
Address	1-1, Mukogawa, Nishinomiya, Hyogo	1-1, Mukogawa, Nishinomiya, Hyogo	1-1, Mukogawa, Nishinomiya, Hyogo	1-1, Mukogawa, Nishinomiya, Hyogo	1-1, Mukogawa, Nishinomiya, Hyogo
Country	Japan	Japan	Japan	Japan	Japan
Note
Nucleous Area	437	299	468	206	305.5
Nucleous Circularity	0.824771	0.886239	0.73027	0.817154	0.88021
Nucleous Bending	1.28571	1.35714	4.56757	1.625	2.13559
Nucleous Convex Area	483	334	519	239	343
Nucleous Ellipse Long Axis	29.0436	20.484	34.9482	20.3486	20.8696
Nucleous Inertia	33181.7	14439.3	44270.2	7490.62	15052.2
Cell Area	4581	2397	2578	4347.5	3673.5
Cell Circularity	0.460661	0.505494	0.433978	0.556509	0.479459
Cell Bending	4.06711	3.01942	3.0177	2.00743	3.49425
Cell Convex Area
Cell Ellipse Long Axis	96.3934	68.5278	73.6602	78.2245	95.3996
Cell Inertia	3817110	1025330	1253860	3193560	2686290
Cell-nucleous Area Ratio	0.095394	0.124739	0.181536	0.0473836	0.0831632
Cell-nucleous Eccentricity1	0.568217	0.374853	0.350979	0.337222	0.509241
Cell-nucleous Eccentricity2	0.363688	0.247645	0.219324	0.31651	0.263936
Cell-nucleous Eccentricity3	1.82265	0.904785	0.942379	1.91113	1.34827
Cell-nucleous Eccentricity4	1.20705	0.82848	0.462269	1.21673	1.20651