Image : Cell Image ID 477

No.

SHOGoiN cell id

Image (Image ID)

Title

Sample

Method

Contact

Morphologic Feature

Note

2010101000002000000000-028

477

Pharynx:Basal cell:Human

Location	Pharynx
Age	75
Sex	male
Race	Japanese
Disease	basaloid squamous cell carcinoma
Cause Of Death	-
Date	2011.9.22
Condition	normal or mild epithelium hyperplasia

Embedding Mehtod	paraffin
Staining Mehtod	hematoxylin
Microscope	OLYMPUS BX50
Camera	OLYMPUS DP20
Image Size (pixels)	1200x1600
Resolution (ppi)	72
magnification	400

Person	Koji Yamanegi
E-mail	yamanegi@hyo-med.ac.jp
Telephone	0798-45-6432
Fax	0798-45-6431
Affiliation	Department of clinical pathology, Hyogo collage of medicine
Address	1-1, Mukogawa, Nishinomiya, Hyogo

	Cell	Nucleus		Nucleus/Cell
Area	1257.5	438.5	Area ratio	0.348708
Circularity	0.434289	0.909427	Eccentricity1	0.0265485
Convex area		476	Eccentricity2	0.0229406
Bending energy	3.6319	1.13846	Eccentricity3	0.044362
Elliptic long axis	43.5908	24.9806	Eccentricity3	0.044362
Inertia moment	264167	30913.8	Eccentricity4	0.040031

SHOGoiN Cell Taxonomy

No.	Germ Layer	Differentiation State	Source Age	Anatomy Id	Cell Type Id	Anatomy:body Part	Anatomy:organ	Anatomy:sub-organ	Anatomy:tissue 1	Anatomy:tissue 2	Anatomy:tissue 3	Anatomy:tissue 4	Anatomy:tissue 5-1	Anatomy:tissue 5-2	Anatomy:tissue 5-3	Anatomy:tissue 5-4	Cell Type	Synonym	CL Id	UBERON Id	Image Id	Tissue Image ID
1	2 Ecotodermal	4 Terminally differentiated	6 Fetus state 7 Postnatal state 8 Neonatal state 9 Infant state 10 Juvenile 11 Adult	2010101000002000000000	028	Neck	Pharynx	Laryngopharynx	Mucosa			Stratified squamous epithelium					Basal cell		CL:0000646		477, 478, 479

Image

SHOGoiN Cell Id	2010101000002000000000-028	2010101000002000000000-028	2010101000002000000000-028
Image Id	477	478	479
Tissue	Pharynx	Pharynx	Pharynx
Cell Type	Basal cell	Basal cell	Basal cell
Organism	Human	Human	Human
Cell Strain
Location	Pharynx	Pharynx	Pharynx
Karyotype
Race	Japanese	Japanese	Japanese
Age	75	75	75
Sex	male	male	male
Medium
Serum
Other Chemical
Feeder
Other Treatment
Culture Period
Differentiaion
Self Renewal Ability
Onocogenic Transformation
Knock Out Gene
Knock In Gene
Disease	basaloid squamous cell carcinoma	basaloid squamous cell carcinoma	basaloid squamous cell carcinoma
Cod
Shooting Date	2011.9.22	2011.9.22	2011.9.22
Shooting Condition	normal or mild epithelium hyperplasia	normal or mild epithelium hyperplasia	normal or mild epithelium hyperplasia
Embedding	paraffin	paraffin	paraffin
Staining	hematoxylin	hematoxylin	hematoxylin
Microscope	OLYMPUS BX50	OLYMPUS BX50	OLYMPUS BX50
Camera	OLYMPUS DP20	OLYMPUS DP20	OLYMPUS DP20
Image Size X	1600	1600	1600
Image Size Y	1200	1200	1200
Resolution	72	72	72
Magnification	400	400	400
Contact Person	Koji Yamanegi	Koji Yamanegi	Koji Yamanegi
Email	yamanegi@hyo-med.ac.jp	yamanegi@hyo-med.ac.jp	yamanegi@hyo-med.ac.jp
Telephone	0798-45-6432	0798-45-6432	0798-45-6432
Fax	0798-45-6431	0798-45-6431	0798-45-6431
Affiliation	Department of clinical pathology, Hyogo collage of medicine	Department of clinical pathology, Hyogo collage of medicine	Department of clinical pathology, Hyogo collage of medicine
Zip Code	663-8501	663-8501	663-8501
Address	1-1, Mukogawa, Nishinomiya, Hyogo	1-1, Mukogawa, Nishinomiya, Hyogo	1-1, Mukogawa, Nishinomiya, Hyogo
Country	Japan	Japan	Japan
Note
Nucleous Area	438.5	564.5	383.5
Nucleous Circularity	0.909427	0.895315	0.895597
Nucleous Bending	1.13846	1.09091	1.26984
Nucleous Convex Area	476	612	421
Nucleous Ellipse Long Axis	24.9806	27.8006	23.189
Nucleous Inertia	30913.8	51046.9	23652.7
Cell Area	1257.5	1414.5	1673
Cell Circularity	0.434289	0.569879	0.382475
Cell Bending	3.6319	2.95425	4.30303
Cell Convex Area
Cell Ellipse Long Axis	43.5908	44.2474	53.3762
Cell Inertia	264167	327551	493147
Cell-nucleous Area Ratio	0.348708	0.399081	0.229229
Cell-nucleous Eccentricity1	0.0265485	0.0720019	0.0666134
Cell-nucleous Eccentricity2	0.0229406	0.0678007	0.0529904
Cell-nucleous Eccentricity3	0.044362	0.115979	0.133871
Cell-nucleous Eccentricity4	0.040031	0.107911	0.121973