Image : Cell Image ID 488

No.

SHOGoiN cell id

Image (Image ID)

Title

Sample

Method

Contact

Morphologic Feature

Note

8010000000000000000000-010

488

Immune system (blood):Mast cell:Human

Location	Pharynx
Age	81
Sex	male
Race	Japanese
Disease	squamous cell carcinoma
Cause Of Death	-
Date	2011.9.22
Condition	normal or mild epithelium hyperplasia

Embedding Mehtod	paraffin
Staining Mehtod	hematoxylin
Microscope	OLYMPUS BX50
Camera	OLYMPUS DP20
Image Size (pixels)	1200x1600
Resolution (ppi)	72
magnification	400

Person	Koji Yamanegi
E-mail	yamanegi@hyo-med.ac.jp
Telephone	0798-45-6432
Fax	0798-45-6431
Affiliation	Department of clinical pathology, Hyogo collage of medicine
Address	1-1, Mukogawa, Nishinomiya, Hyogo

	Cell	Nucleus		Nucleus/Cell
Area	412	217.5	Area ratio	0.527913
Circularity	0.718081	0.84509	Eccentricity1	0.0485106
Convex area		250	Eccentricity2	0.0385239
Bending energy	2.28571	1.55102	Eccentricity3	0.0692443
Elliptic long axis	25.9579	19.2603	Eccentricity3	0.0692443
Inertia moment	28204.8	7897.75	Eccentricity4	0.0519202

SHOGoiN Cell Taxonomy

No.	Germ Layer	Differentiation State	Source Age	Anatomy Id	Cell Type Id	Anatomy:body Part	Anatomy:organ	Anatomy:sub-organ	Anatomy:tissue 1	Anatomy:tissue 2	Anatomy:tissue 3	Anatomy:tissue 4	Anatomy:tissue 5-1	Anatomy:tissue 5-2	Anatomy:tissue 5-3	Anatomy:tissue 5-4	Cell Type	Synonym	CL Id	UBERON Id	Image Id	Tissue Image ID
1	4 Mesodermal	4 Terminally differentiated	6 Fetus state 7 Postnatal state 8 Neonatal state 9 Infant state 10 Juvenile 11 Adult	8010000000000000000000	010	Immune system class	Blood										Mast cell		CL:0000097		32, 488, 489

Image

SHOGoiN Cell Id	8010000000000000000000-010	8010000000000000000000-010	8010000000000000000000-010
Image Id	32	488	489
Tissue	Immune system (blood)	Immune system (blood)	Immune system (blood)
Cell Type	Mast cell	Mast cell	Mast cell
Organism	Human	Human	Human
Cell Strain
Location	Large intestine	Pharynx	Pharynx
Karyotype
Race	Japanese	Japanese	Japanese
Age	60	81	81
Sex	Male	male	male
Medium
Serum
Other Chemical
Feeder
Other Treatment
Culture Period
Differentiaion
Self Renewal Ability
Onocogenic Transformation
Knock Out Gene
Knock In Gene
Disease	cancer of sigmoid colon	squamous cell carcinoma	squamous cell carcinoma
Cod
Shooting Date	2008.7.31	2011.9.22	2011.9.22
Shooting Condition	normal tissue from sigmoid colon	normal or mild epithelium hyperplasia	normal or mild epithelium hyperplasia
Embedding	Paraffin	paraffin	paraffin
Staining	Hematoxylin	hematoxylin	hematoxylin
Microscope	OLYMPUS DX51	OLYMPUS BX50	OLYMPUS BX50
Camera	OLYMPUS DP21	OLYMPUS DP20	OLYMPUS DP20
Image Size X	1600	1600	1600
Image Size Y	1200	1200	1200
Resolution	72	72	72
Magnification	400	400	400
Contact Person	Koji Yamanegi	Koji Yamanegi	Koji Yamanegi
Email	yamanegi@hyo-med.ac.jp	yamanegi@hyo-med.ac.jp	yamanegi@hyo-med.ac.jp
Telephone	0798-45-6432	0798-45-6432	0798-45-6432
Fax	0798-45-6431	0798-45-6431	0798-45-6431
Affiliation	Department of clinical pathology, Hyogo collage of medicine	Department of clinical pathology, Hyogo collage of medicine	Department of clinical pathology, Hyogo collage of medicine
Zip Code	663-8501	663-8501	663-8501
Address	1-1, Mukogawa, Nishinomiya, Hyogo	1-1, Mukogawa, Nishinomiya, Hyogo	1-1, Mukogawa, Nishinomiya, Hyogo
Country	Japan	Japan	Japan
Note
Nucleous Area	166.5	217.5	278.5
Nucleous Circularity	0.89	0.84509	0.862537
Nucleous Bending	192	1.55102	3.16364
Nucleous Convex Area	4444.44	250	313
Nucleous Ellipse Long Axis	14.7	19.2603	20.8697
Nucleous Inertia	1.58	7897.75	12713.6
Cell Area	2079.5	412	350.5
Cell Circularity	0.47	0.718081	0.800352
Cell Bending	3.15	2.28571	2.19048
Cell Convex Area	2507
Cell Ellipse Long Axis	62.37	25.9579	22.8345
Cell Inertia	773668	28204.8	20007.4
Cell-nucleous Area Ratio	0.08	0.527913	0.794579
Cell-nucleous Eccentricity1	0.43	0.0485106	0
Cell-nucleous Eccentricity2	0.3	0.0385239	0
Cell-nucleous Eccentricity3	1.31	0.0692443	0
Cell-nucleous Eccentricity4	1.29	0.0519202	0