SHOGoiN Cell Methylome: GSM1015970

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM1015970


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3070000080000000000000-144Sequence Read ArchiveSRP016010SRP016010_M2Single-cell DNA methylation analysis of epimutations in mouse liver cells.MethylomeHepatocyteMouseLiverBisulfite-Seq (RRBS)HiSeq 2000Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSMUSG00000022951 Rcan1 regulator of calcineurin 1 10.6147 0.0000
2 ENSMUSG00000031201 Brcc3 Lys-63-specific deubiquitinase BRCC36 6.7814 0.0000
3 ENSMUSG00000069785 Gm11444 NA 6.7279 0.0000
4 ENSMUSG00000026278 Bok Bcl-2-related ovarian killer protein 6.6273 0.0000
5 ENSMUSG00000001349 Cnn1 Calponin-1 6.2738 0.0000
6 ENSMUSG00000103194 Gm37643 predicted gene, 37643 6.2577 0.0000
7 ENSMUSG00000098137 Gm33962 predicted gene, 33962 6.1085 0.0000
8 ENSMUSG00000039989 Cbx4 E3 SUMO-protein ligase CBX4 6.0444 0.0000
9 ENSMUSG00000097614 Gm26508 predicted gene, 26508 6.0444 0.0000
10 ENSMUSG00000062105 Olfr183 NA 5.8071 0.0000

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
50998 ENSMUSG00000098500 Mir6396 microRNA 6396 -2.0000 0.0673
50997 ENSMUSG00000098057 Gm6283 predicted gene 6283 -2.0000 0.0673
50996 ENSMUSG00000096427 Olfr895 NA -2.0000 0.0673
50995 ENSMUSG00000093684 Gm27857 predicted gene, 27857 -2.0000 0.0045
50994 ENSMUSG00000092476 Vmn1r-ps65 vomeronasal 1 receptor, pseudogene 65 -2.0000 0.0045
50993 ENSMUSG00000089070 Gm24498 predicted gene, 24498 -2.0000 0.0673
50992 ENSMUSG00000088562 Gm23780 predicted gene, 23780 -2.0000 0.0673
50991 ENSMUSG00000087273 Gm13203 predicted gene 13203 -2.0000 0.0000
50990 ENSMUSG00000085941 Gm11201 NA -2.0000 0.0673
50989 ENSMUSG00000084781 D930015M05Rik RIKEN cDNA D930015M05 gene -2.0000 0.0673

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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