SHOGoiN Cell Methylome: GSM1015971

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM1015971


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3070000080000000000000-144Sequence Read ArchiveSRP016010SRP016010_M3Single-cell DNA methylation analysis of epimutations in mouse liver cells.MethylomeHepatocyteMouseLiverBisulfite-Seq (RRBS)HiSeq 2000Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSMUSG00000035133 Arhgap5 Rho GTPase activating protein 5 7.4009 0.0000
2 ENSMUSG00000095477 Gm25076 predicted gene, 25076 7.3750 0.0000
3 ENSMUSG00000022951 Rcan1 regulator of calcineurin 1 6.9542 0.0000
4 ENSMUSG00000054662 Ano9 Anoctamin-9 6.2288 0.0000
5 ENSMUSG00000066877 Nck2 Cytoplasmic protein NCK2 6.0661 0.0000
6 ENSMUSG00000028857 Tmem222 Transmembrane protein 222 5.9773 0.0000
7 ENSMUSG00000083241 Gm13259 predicted gene 13259 5.9773 0.0000
8 ENSMUSG00000052426 Gm9877 predicted gene 9877 5.7549 0.0000
9 ENSMUSG00000032333 Stoml1 stomatin like 1 5.6147 0.0000
10 ENSMUSG00000036986 Pml Protein PML 5.6147 0.0000

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
50998 ENSMUSG00000107194 Gm43173 predicted gene 43173 -2.3219 0.0390
50997 ENSMUSG00000106537 Gm43502 predicted gene 43502 -2.3219 0.0390
50996 ENSMUSG00000105424 Gm44304 predicted gene, 44304 -2.3219 0.0390
50995 ENSMUSG00000097836 Gm26903 predicted gene, 26903 -2.3219 0.0390
50994 ENSMUSG00000095026 Gm3336 NA -2.3219 0.0390
50993 ENSMUSG00000093063 Gm23152 predicted gene, 23152 -2.3219 0.0390
50992 ENSMUSG00000091305 Gm17100 predicted gene 17100 -2.3219 0.0390
50991 ENSMUSG00000088700 Gm25554 predicted gene, 25554 -2.3219 0.0390
50990 ENSMUSG00000087892 Gm25278 predicted gene, 25278 -2.3219 0.0390
50989 ENSMUSG00000086815 3110082J24Rik RIKEN cDNA 3110082J24 gene -2.3219 0.0015

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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