SHOGoiN Cell Methylome: GSM1015972

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM1015972


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3100500-144Sequence Read ArchiveSRP016010SRP016010_M4Single-cell DNA methylation analysis of epimutations in mouse liver cells.MethylomeHepatocyteMouseLiverBisulfite-Seq (RRBS)HiSeq 2000Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSMUSG00000064289 Tank TRAF family member-associated Nf-kappa B activator 6.3399 0.0000
2 ENSMUSG00000029028 Lrrc47 leucine rich repeat containing 47 5.4798 0.0000
3 ENSMUSG00000083241 Gm13259 predicted gene 13259 5.3923 0.0000
4 ENSMUSG00000069085 Dytn dystrotelin 5.0018 0.0000
5 ENSMUSG00000105151 Gm43241 predicted gene 43241 4.8074 0.0002
6 ENSMUSG00000037535 1700021A07Rik RIKEN cDNA 1700021A07 gene 4.6147 0.0000
7 ENSMUSG00000105055 Gm43079 predicted gene 43079 4.5236 0.0007
8 ENSMUSG00000086203 Gm13985 predicted gene 13985 4.3219 0.0019
9 ENSMUSG00000022905 Kpna1 karyopherin (importin) alpha 1 4.2089 0.0000
10 ENSMUSG00000086324 Gm15564 predicted gene 15564 4.2089 0.0000

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
51076 ENSMUSG00000004771 Rab11a RAB11A, member RAS oncogene family -2.3219 0.0074
51075 ENSMUSG00000029191 Rfc1 replication factor C (activator 1) 1 -2.2889 0.0000
51074 ENSMUSG00000068523 Gng5 guanine nucleotide binding protein (G protein), gamma 5 -2.2472 0.0000
51073 ENSMUSG00000028188 Spata1 spermatogenesis associated 1 -2.2472 0.0000
51072 ENSMUSG00000028187 Rpf1 ribosome production factor 1 homolog -2.2472 0.0000
51071 ENSMUSG00000110910 NA -2.0000 0.0252
51070 ENSMUSG00000105544 Gm44477 predicted gene, 44477 -2.0000 0.0252
51069 ENSMUSG00000102971 A730062M13Rik RIKEN cDNA A730062M13 gene -2.0000 0.0252
51068 ENSMUSG00000094318 Gm13144 predicted gene 13144 -2.0000 0.0006
51067 ENSMUSG00000082925 Gm13135 predicted gene 13135 -2.0000 0.0006

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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