SHOGoiN Cell Methylome: GSM1015972

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM1015972


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3070000080000000000000-144Sequence Read ArchiveSRP016010SRP016010_M4Single-cell DNA methylation analysis of epimutations in mouse liver cells.MethylomeHepatocyteMouseLiverBisulfite-Seq (RRBS)HiSeq 2000Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSMUSG00000064289 Tank Mus musculus TRAF family member-associated Nf-kappa B activator (Tank), transcript variant 4, mRNA. 6.3399 0.0000
2 ENSMUSG00000029028 Lrrc47 Leucine-rich repeat-containing protein 47 5.4798 0.0000
3 ENSMUSG00000083241 Gm13259 predicted gene 13259 5.3923 0.0000
4 ENSMUSG00000069085 Dytn Dystrotelin 5.0018 0.0000
5 ENSMUSG00000105151 Gm43241 predicted gene 43241 4.8074 0.0002
6 ENSMUSG00000037535 1700021A07Rik RIKEN cDNA 1700021A07 gene 4.6147 0.0000
7 ENSMUSG00000105055 Gm43079 predicted gene 43079 4.5236 0.0007
8 ENSMUSG00000086203 Gm13985 predicted gene 13985 4.3219 0.0019
9 ENSMUSG00000022905 Kpna1 Importin subunit alpha-5 4.2089 0.0000
10 ENSMUSG00000086324 Gm15564 predicted gene 15564 4.2089 0.0000

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
50998 ENSMUSG00000073679 Mxra8os NA -1.5850 0.0860
50997 ENSMUSG00000073400 Trim10 Tripartite motif-containing protein 10 -1.5850 0.0860
50996 ENSMUSG00000072809 9330160F10Rik RIKEN cDNA 9330160F10 gene -1.5850 0.0860
50995 ENSMUSG00000072582 Ptrh2 Peptidyl-tRNA hydrolase 2, mitochondrial -1.5850 0.0860
50994 ENSMUSG00000071280 Gm10322 NA -1.5850 0.0006
50993 ENSMUSG00000070074 Mir484 microRNA 484 -1.5850 0.0860
50992 ENSMUSG00000069785 Gm11444 NA -1.5850 0.0860
50991 ENSMUSG00000067586 S1pr3 Sphingosine 1-phosphate receptor 3 -1.5850 0.0860
50990 ENSMUSG00000065481 Mir346 microRNA 346 -1.5850 0.0074
50989 ENSMUSG00000065435 Mir135b microRNA 135b -1.5850 0.0860

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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