SHOGoiN Cell Methylome: GSM1147580

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM1147580


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7020001000000000000000-715Sequence Read ArchiveSRP023116SRP023116_M1Single cell methylome landscapes of mouse embryonic stem cells and early embryos analyzed by reduced representation bisulfite sequencingMethylomeEmbryonic stem cellMouseEarly embryonic tissueBisulfite-Seq (RRBS)HiSeq 2000Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSMUSG00000064763 Gm23515 predicted gene, 23515 9.0821 0.0000
2 ENSMUSG00000099069 Mir8090 microRNA 8090 9.0768 0.0000
3 ENSMUSG00000074595 Wfdc6a WAP four-disulfide core domain 6A 8.6770 0.0000
4 ENSMUSG00000077257 Gm26080 predicted gene, 26080 8.4686 0.0000
5 ENSMUSG00000080542 Gm22710 predicted gene, 22710 8.4686 0.0000
6 ENSMUSG00000107722 2900060B14Rik RIKEN cDNA 2900060B14 gene 8.4686 0.0000
7 ENSMUSG00000066359 Tcl1b1 T cell leukemia/lymphoma 1B, 1 8.2715 0.0000
8 ENSMUSG00000089627 Gm16228 predicted gene 16228 8.2510 0.0000
9 ENSMUSG00000072722 Gm6588 NA 8.1816 0.0000
10 ENSMUSG00000109602 Gm31597 predicted gene, 31597 8.1749 0.0000

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
50998 ENSMUSG00000081688 Gm12499 predicted gene 12499 -7.3663 0.0000
50997 ENSMUSG00000064569 Gm25592 predicted gene, 25592 -7.3663 0.0000
50996 ENSMUSG00000090862 Rps13 ribosomal protein S13 -7.3635 0.0000
50995 ENSMUSG00000063296 Tmem117 Transmembrane protein 117 -7.3534 0.0000
50994 ENSMUSG00000031853 Map3k21 Mitogen-activated protein kinase kinase kinase 21 -7.3481 0.0000
50993 ENSMUSG00000040464 Gtpbp10 GTP-binding protein 10 -7.3478 0.0000
50992 ENSMUSG00000048065 Cyb5r2 NADH-cytochrome b5 reductase 2 -7.3458 0.0000
50991 ENSMUSG00000041471 Fam35a Protein FAM35A -7.3458 0.0000
50990 ENSMUSG00000035726 Supt16 suppressor of Ty 16 -7.3336 0.0000
50989 ENSMUSG00000015357 Clpx ATP-dependent Clp protease ATP-binding subunit clpX-like, mitochondrial -7.3331 0.0000

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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