SHOGoiN Cell Methylome: GSM1147581

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM1147581


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7020001000000000000000-715Sequence Read ArchiveSRP023116SRP023116_M2Single cell methylome landscapes of mouse embryonic stem cells and early embryos analyzed by reduced representation bisulfite sequencingMethylomeEmbryonic stem cellMouseEarly embryonic tissueBisulfite-Seq (RRBS)HiSeq 2000Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSMUSG00000066060 Gm12866 NA 7.9278 0.0000
2 ENSMUSG00000086405 9330198N18Rik RIKEN cDNA 9330198N18 gene 7.6906 0.0000
3 ENSMUSG00000028280 Gabrr1 Gamma-aminobutyric acid receptor subunit rho-1 7.4919 0.0000
4 ENSMUSG00000043501 Lgals2 Galectin-2 7.3092 0.0000
5 ENSMUSG00000104037 Gm37776 predicted gene, 37776 7.2637 0.0000
6 ENSMUSG00000100357 Gm28181 predicted gene 28181 7.1799 0.0000
7 ENSMUSG00000085001 Rapgef4os2 Rap guanine nucleotide exchange factor (GEF) 4, opposite strand 2 7.0553 0.0000
8 ENSMUSG00000038044 Cct8l1 chaperonin containing TCP1, subunit 8 (theta)-like 1 6.9542 0.0000
9 ENSMUSG00000088340 Gm22338 predicted gene, 22338 6.9307 0.0000
10 ENSMUSG00000072878 1700123L14Rik RIKEN cDNA 1700123L14 gene 6.9174 0.0000

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
50998 ENSMUSG00000085526 Gm16083 predicted gene 16083 -5.9650 0.0000
50997 ENSMUSG00000001924 Uba1 ubiquitin-like modifier activating enzyme 1 -5.9586 0.0000
50996 ENSMUSG00000037815 Ctnna1 Catenin alpha-1 -5.9542 0.0000
50995 ENSMUSG00000031362 Xlr4c X-linked lymphocyte-regulated 4C -5.9542 0.0000
50994 ENSMUSG00000031960 Aars alanyl-tRNA synthetase -5.9531 0.0000
50993 ENSMUSG00000074925 Ptar1 protein prenyltransferase alpha subunit repeat containing 1 -5.9506 0.0000
50992 ENSMUSG00000050379 Sept6 Septin-6 -5.9489 0.0000
50991 ENSMUSG00000024598 Fbn2 Fibrillin-2 Fibrillin-2 C-terminal peptide -5.9467 0.0000
50990 ENSMUSG00000026926 Pmpca peptidase (mitochondrial processing) alpha -5.9459 0.0000
50989 ENSMUSG00000067212 H2-T23 H-2 class I histocompatibility antigen, D-37 alpha chain -5.9342 0.0000

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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