SHOGoiN Cell Methylome: GSM1147581

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM1147581


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9060100-715Sequence Read ArchiveSRP023116SRP023116_M2Single cell methylome landscapes of mouse embryonic stem cells and early embryos analyzed by reduced representation bisulfite sequencingMethylomeEmbryonic stem cellMouseEarly embryonic tissueBisulfite-Seq (RRBS)HiSeq 2000Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSMUSG00000066060 Gm12866 predicted gene 12866 7.9278 0.0000
2 ENSMUSG00000086405 9330198N18Rik RIKEN cDNA 9330198N18 gene 7.6906 0.0000
3 ENSMUSG00000028280 Gabrr1 gamma-aminobutyric acid (GABA) C receptor, subunit rho 1 7.4919 0.0000
4 ENSMUSG00000043501 Lgals2 lectin, galactose-binding, soluble 2 7.3092 0.0000
5 ENSMUSG00000104037 Gm37776 predicted gene, 37776 7.2637 0.0000
6 ENSMUSG00000100357 Gm28181 predicted gene 28181 7.1799 0.0000
7 ENSMUSG00000085001 Rapgef4os2 Rap guanine nucleotide exchange factor (GEF) 4, opposite strand 2 7.0553 0.0000
8 ENSMUSG00000038044 Cct8l1 chaperonin containing TCP1, subunit 8 (theta)-like 1 6.9542 0.0000
9 ENSMUSG00000088340 Gm22338 predicted gene, 22338 6.9307 0.0000
10 ENSMUSG00000072878 1700123L14Rik RIKEN cDNA 1700123L14 gene 6.9174 0.0000

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
51076 ENSMUSG00000044702 Palb2 partner and localizer of BRCA2 -6.3219 0.0012
51075 ENSMUSG00000022639 Dubr Dppa2 upstream binding RNA -6.3167 0.0000
51074 ENSMUSG00000059554 Ccdc28a coiled-coil domain containing 28A -6.3038 0.0000
51073 ENSMUSG00000077328 Gm25832 predicted gene, 25832 -6.3004 0.0000
51072 ENSMUSG00000062252 Lhfpl5 lipoma HMGIC fusion partner-like 5 -6.2977 0.0000
51071 ENSMUSG00000022636 Alcam activated leukocyte cell adhesion molecule -6.2860 0.0000
51070 ENSMUSG00000038116 Phf20 PHD finger protein 20 -6.2854 0.0000
51069 ENSMUSG00000039728 Slc6a5 solute carrier family 6 (neurotransmitter transporter, glycine), member 5 -6.2823 0.0000
51068 ENSMUSG00000032434 Cmtm6 CKLF-like MARVEL transmembrane domain containing 6 -6.2668 0.0000
51067 ENSMUSG00000068114 Ccdc134 coiled-coil domain containing 134 -6.2660 0.0000

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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