SHOGoiN Cell Methylome: GSM1147584

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM1147584


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7020001000000000000000-715Sequence Read ArchiveSRP023116SRP023116_M5Single cell methylome landscapes of mouse embryonic stem cells and early embryos analyzed by reduced representation bisulfite sequencingMethylomeEmbryonic stem cellMouseEarly embryonic tissueBisulfite-Seq (RRBS)HiSeq 2000Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSMUSG00000087835 Gm24481 predicted gene, 24481 6.0224 0.0000
2 ENSMUSG00000006711 D130043K22Rik Dyslexia-associated 5.9542 0.0000
3 ENSMUSG00000054036 Olfr279 NA 5.9307 0.0000
4 ENSMUSG00000029154 Cwh43 PGAP2-interacting protein 5.5236 0.0000
5 ENSMUSG00000103441 7530428D23Rik RIKEN cDNA 7530428D23 gene 5.5236 0.0000
6 ENSMUSG00000089659 Gm3470 predicted gene 3470 5.4263 0.0000
7 ENSMUSG00000092409 Gm9613 predicted gene 9613 5.3576 0.0000
8 ENSMUSG00000088832 Gm23543 predicted gene, 23543 5.3557 0.0000
9 ENSMUSG00000026829 Gbgt1 Globoside alpha-1,3-N-acetylgalactosaminyltransferase 1 5.3277 0.0000
10 ENSMUSG00000111342 4933404K13Rik RIKEN cDNA 4933404K13 gene 5.3219 0.0000

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
50998 ENSMUSG00000035770 Dync1li2 Cytoplasmic dynein 1 light intermediate chain 2 -4.7858 0.0000
50997 ENSMUSG00000039449 Prpf18 pre-mRNA processing factor 18 -4.7856 0.0000
50996 ENSMUSG00000034190 Chmp7 Charged multivesicular body protein 7 -4.7853 0.0000
50995 ENSMUSG00000105609 Gm42501 predicted gene 42501 -4.7832 0.0000
50994 ENSMUSG00000099092 Mir7062 microRNA 7062 -4.7746 0.0000
50993 ENSMUSG00000096917 2500002B13Rik RIKEN cDNA 2500002B13 gene -4.7740 0.0000
50992 ENSMUSG00000031609 Sap30 Histone deacetylase complex subunit SAP30 -4.7740 0.0000
50991 ENSMUSG00000078584 AU022252 Uncharacterized -4.7718 0.0000
50990 ENSMUSG00000031751 Amfr E3 ubiquitin-protein ligase AMFR -4.7697 0.0000
50989 ENSMUSG00000106175 Gm44313 predicted gene, 44313 -4.7630 0.0000

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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