SHOGoiN Cell Methylome: GSM1147584

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM1147584


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9060100-715Sequence Read ArchiveSRP023116SRP023116_M5Single cell methylome landscapes of mouse embryonic stem cells and early embryos analyzed by reduced representation bisulfite sequencingMethylomeEmbryonic stem cellMouseEarly embryonic tissueBisulfite-Seq (RRBS)HiSeq 2000Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSMUSG00000087835 Gm24481 predicted gene, 24481 6.0224 0.0000
2 ENSMUSG00000006711 D130043K22Rik RIKEN cDNA D130043K22 gene 5.9542 0.0000
3 ENSMUSG00000054036 Olfr279 olfactory receptor 279 5.9307 0.0000
4 ENSMUSG00000029154 Cwh43 cell wall biogenesis 43 C-terminal homolog 5.5236 0.0000
5 ENSMUSG00000103441 7530428D23Rik RIKEN cDNA 7530428D23 gene 5.5236 0.0000
6 ENSMUSG00000089659 Gm3470 predicted gene 3470 5.4263 0.0000
7 ENSMUSG00000092409 Gm9613 predicted gene 9613 5.3576 0.0000
8 ENSMUSG00000088832 Gm23543 predicted gene, 23543 5.3557 0.0000
9 ENSMUSG00000026829 Gbgt1 globoside alpha-1,3-N-acetylgalactosaminyltransferase 1 5.3277 0.0000
10 ENSMUSG00000111342 NA 5.3219 0.0000

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
51076 ENSMUSG00000015869 Prpsap1 phosphoribosyl pyrophosphate synthetase-associated protein 1 -5.0463 0.0000
51075 ENSMUSG00000092852 Mir5103 microRNA 5103 -5.0444 0.0000
51074 ENSMUSG00000023908 Pkmyt1 protein kinase, membrane associated tyrosine/threonine 1 -5.0444 0.0000
51073 ENSMUSG00000001998 Ap4e1 adaptor-related protein complex AP-4, epsilon 1 -5.0444 0.0001
51072 ENSMUSG00000092329 Gm20388 predicted gene 20388 -5.0427 0.0000
51071 ENSMUSG00000054894 Atp5s ATP synthase, H+ transporting, mitochondrial F0 complex, subunit S -5.0370 0.0000
51070 ENSMUSG00000020988 L2hgdh L-2-hydroxyglutarate dehydrogenase -5.0370 0.0000
51069 ENSMUSG00000025739 Gng13 guanine nucleotide binding protein (G protein), gamma 13 -5.0346 0.0000
51068 ENSMUSG00000075054 Yae1d1 Yae1 domain containing 1 -5.0342 0.0000
51067 ENSMUSG00000042719 Naa25 N(alpha)-acetyltransferase 25, NatB auxiliary subunit -5.0296 0.0012

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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