SHOGoiN Cell Methylome: GSM1147585

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM1147585


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7020001000000000000000-715Sequence Read ArchiveSRP023116SRP023116_M6Single cell methylome landscapes of mouse embryonic stem cells and early embryos analyzed by reduced representation bisulfite sequencingMethylomeEmbryonic stem cellMouseEarly embryonic tissueBisulfite-Seq (RRBS)HiSeq 2000Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSMUSG00000067931 Zfp948 zinc finger protein 948 8.4553 0.0000
2 ENSMUSG00000088398 Gm26306 predicted gene, 26306 8.4034 0.0000
3 ENSMUSG00000100987 Gm1627 predicted gene 1627 8.3354 0.0000
4 ENSMUSG00000013668 4933402N03Rik RIKEN cDNA 4933402N03 gene 8.3083 0.0000
5 ENSMUSG00000100759 1700029B22Rik RIKEN cDNA 1700029B22 gene 8.3083 0.0000
6 ENSMUSG00000102768 Gm19002 predicted gene, 19002 8.1174 0.0000
7 ENSMUSG00000089598 Gm26158 predicted gene, 26158 8.0954 0.0000
8 ENSMUSG00000095530 Snora19 small nucleolar RNA, H/ACA box 19 8.0954 0.0000
9 ENSMUSG00000105118 Mir3084-2 microRNA 3084-2 8.0954 0.0000
10 ENSMUSG00000103606 Gm412 predicted gene 412 8.0703 0.0000

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
51076 ENSMUSG00000031370 Zrsr2 zinc finger (CCCH type), RNA binding motif and serine/arginine rich 2 -7.4830 0.0000
51075 ENSMUSG00000026628 Atf3 activating transcription factor 3 -7.4728 0.0000
51074 ENSMUSG00000030685 Kctd13 potassium channel tetramerisation domain containing 13 -7.4686 0.0000
51073 ENSMUSG00000028149 Rap1gds1 RAP1, GTP-GDP dissociation stimulator 1 -7.4440 0.0000
51072 ENSMUSG00000080712 Hist3h2bb-ps histone cluster 3, H2bb, pseudogene -7.4280 0.0000
51071 ENSMUSG00000078851 Hist3h2a histone cluster 3, H2a -7.4280 0.0000
51070 ENSMUSG00000039530 Tusc3 tumor suppressor candidate 3 -7.4193 0.0000
51069 ENSMUSG00000107291 3110031N09Rik RIKEN cDNA 3110031N09 gene -7.4179 0.0000
51068 ENSMUSG00000022965 Ifngr2 interferon gamma receptor 2 -7.4106 0.0000
51067 ENSMUSG00000086459 1700030C12Rik RIKEN cDNA 1700030C12 gene -7.4057 0.0000

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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