SHOGoiN Cell Methylome: GSM1147585

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM1147585


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7020001000000000000000-715Sequence Read ArchiveSRP023116SRP023116_M6Single cell methylome landscapes of mouse embryonic stem cells and early embryos analyzed by reduced representation bisulfite sequencingMethylomeEmbryonic stem cellMouseEarly embryonic tissueBisulfite-Seq (RRBS)HiSeq 2000Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSMUSG00000067931 Zfp948 zinc finger protein 948 8.4553 0.0000
2 ENSMUSG00000088398 Gm26306 predicted gene, 26306 8.4034 0.0000
3 ENSMUSG00000100987 Gm1627 predicted gene 1627 8.3354 0.0000
4 ENSMUSG00000013668 4933402N03Rik RIKEN cDNA 4933402N03 gene 8.3083 0.0000
5 ENSMUSG00000100759 1700029B22Rik RIKEN cDNA 1700029B22 gene 8.3083 0.0000
6 ENSMUSG00000102768 Gm19002 predicted gene, 19002 8.1174 0.0000
7 ENSMUSG00000089598 Gm26158 predicted gene, 26158 8.0954 0.0000
8 ENSMUSG00000095530 Snora19 small nucleolar RNA, H/ACA box 19 8.0954 0.0000
9 ENSMUSG00000105118 Mir3084-2 microRNA 3084-2 8.0954 0.0000
10 ENSMUSG00000103606 Gm412 predicted gene 412 8.0703 0.0000

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
50998 ENSMUSG00000039328 Rnf122 RING finger protein 122 -7.1752 0.0000
50997 ENSMUSG00000024456 Diaph1 1 -7.1746 0.0000
50996 ENSMUSG00000021760 Gpx8 Probable glutathione peroxidase 8 -7.1732 0.0000
50995 ENSMUSG00000000751 Rpa1 Replication protein A 70 kDa DNA-binding subunit -7.1699 0.0000
50994 ENSMUSG00000097284 4930480K23Rik RIKEN cDNA 4930480K23 gene -7.1648 0.0000
50993 ENSMUSG00000092671 Gm24103 predicted gene, 24103 -7.1636 0.0000
50992 ENSMUSG00000042323 Pbrm1 Protein polybromo-1 -7.1600 0.0000
50991 ENSMUSG00000091745 Gm17098 predicted gene 17098 -7.1551 0.0000
50990 ENSMUSG00000053040 Aph1c Putative gamma-secretase subunit APH-1C -7.1551 0.0000
50989 ENSMUSG00000021113 Snapc1 snRNA-activating protein complex subunit 1 -7.1547 0.0000

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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