SHOGoiN Cell Methylome: GSM1147586

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM1147586


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7020001000000000000000-715Sequence Read ArchiveSRP023116SRP023116_M7Single cell methylome landscapes of mouse embryonic stem cells and early embryos analyzed by reduced representation bisulfite sequencingMethylomeEmbryonic stem cellMouseEarly embryonic tissueBisulfite-Seq (RRBS)HiSeq 2000Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSMUSG00000091411 Gm5916 NA 8.9300 0.0000
2 ENSMUSG00000086730 Platr12 pluripotency associated transcript 12 8.5597 0.0000
3 ENSMUSG00000023387 Kcnk16 NA 8.2394 0.0000
4 ENSMUSG00000005628 Tmod4 tropomodulin 4 8.0955 0.0000
5 ENSMUSG00000092607 Scnm1 Sodium channel modifier 1 8.0955 0.0000
6 ENSMUSG00000082806 Rpl13-ps1 ribosomal protein L13, pseudogene 1 8.0572 0.0000
7 ENSMUSG00000104610 Gm567 predicted gene 567 8.0509 0.0000
8 ENSMUSG00000029165 Agbl5 Cytosolic carboxypeptidase-like protein 5 7.9566 0.0000
9 ENSMUSG00000107201 5930420M18Rik RIKEN cDNA 5930420M18 gene 7.9566 0.0000
10 ENSMUSG00000079484 Phyhd1 Phytanoyl-CoA dioxygenase domain-containing protein 1 7.9464 0.0000

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
50998 ENSMUSG00000006273 Atp6v1b2 V-type proton ATPase subunit B, brain isoform -7.2915 0.0000
50997 ENSMUSG00000097285 Gm26683 predicted gene, 26683 -7.2865 0.0000
50996 ENSMUSG00000026307 Scly selenocysteine lyase -7.2865 0.0000
50995 ENSMUSG00000049321 Zfp2 zinc finger protein 2 -7.2847 0.0000
50994 ENSMUSG00000022211 Carmil3 Capping protein, Arp2/3 and myosin-I linker protein 3 -7.2839 0.0000
50993 ENSMUSG00000026856 Dolpp1 Dolichyldiphosphatase 1 -7.2814 0.0000
50992 ENSMUSG00000024223 Armc12 Armadillo repeat-containing protein 12 -7.2666 0.0000
50991 ENSMUSG00000029499 Pxmp2 peroxisomal membrane protein 2 -7.2607 0.0000
50990 ENSMUSG00000062825 Actg1 Actin, cytoplasmic 2 Actin, cytoplasmic 2, N-terminally processed -7.2593 0.0000
50989 ENSMUSG00000043644 0610009L18Rik RIKEN cDNA 0610009L18 gene -7.2593 0.0000

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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