SHOGoiN Cell Methylome: GSM1147586

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM1147586


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9060100-715Sequence Read ArchiveSRP023116SRP023116_M7Single cell methylome landscapes of mouse embryonic stem cells and early embryos analyzed by reduced representation bisulfite sequencingMethylomeEmbryonic stem cellMouseEarly embryonic tissueBisulfite-Seq (RRBS)HiSeq 2000Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSMUSG00000091411 Gm5916 predicted gene 5916 8.9300 0.0000
2 ENSMUSG00000086730 Platr12 pluripotency associated transcript 12 8.5597 0.0000
3 ENSMUSG00000023387 Kcnk16 potassium channel, subfamily K, member 16 8.2394 0.0000
4 ENSMUSG00000005628 Tmod4 tropomodulin 4 8.0955 0.0000
5 ENSMUSG00000092607 Scnm1 sodium channel modifier 1 8.0955 0.0000
6 ENSMUSG00000082806 Rpl13-ps1 ribosomal protein L13, pseudogene 1 8.0572 0.0000
7 ENSMUSG00000104610 Gm567 predicted gene 567 8.0509 0.0000
8 ENSMUSG00000029165 Agbl5 ATP/GTP binding protein-like 5 7.9566 0.0000
9 ENSMUSG00000107201 5930420M18Rik RIKEN cDNA 5930420M18 gene 7.9566 0.0000
10 ENSMUSG00000079484 Phyhd1 phytanoyl-CoA dioxygenase domain containing 1 7.9464 0.0000

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
51076 ENSMUSG00000097072 Foxl2os forkhead box L2, opposite strand -7.6152 0.0000
51075 ENSMUSG00000050397 Foxl2 forkhead box L2 -7.6152 0.0000
51074 ENSMUSG00000026058 Khdrbs2 KH domain containing, RNA binding, signal transduction associated 2 -7.6035 0.0000
51073 ENSMUSG00000022383 Ppara peroxisome proliferator activated receptor alpha -7.5950 0.0000
51072 ENSMUSG00000024095 Hnrnpll heterogeneous nuclear ribonucleoprotein L-like -7.5944 0.0000
51071 ENSMUSG00000021730 Hcn1 hyperpolarization-activated, cyclic nucleotide-gated K+ 1 -7.5880 0.0000
51070 ENSMUSG00000046908 Ltb4r1 leukotriene B4 receptor 1 -7.5869 0.0000
51069 ENSMUSG00000088506 Gm24409 predicted gene, 24409 -7.5599 0.0000
51068 ENSMUSG00000024955 Esrra estrogen related receptor, alpha -7.5574 0.0000
51067 ENSMUSG00000042595 Fam199x family with sequence similarity 199, X-linked -7.5344 0.0000

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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