SHOGoiN Cell Methylome: GSM1147587

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM1147587


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7020001000000000000000-715Sequence Read ArchiveSRP023116SRP023116_M8Single cell methylome landscapes of mouse embryonic stem cells and early embryos analyzed by reduced representation bisulfite sequencingMethylomeEmbryonic stem cellMouseEarly embryonic tissueBisulfite-Seq (RRBS)HiSeq 2000Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSMUSG00000048188 Gm8181 predicted gene 8181 7.7944 0.0000
2 ENSMUSG00000035246 Pcyt1b Choline-phosphate cytidylyltransferase B 7.6933 0.0000
3 ENSMUSG00000067610 Klri1 Killer cell lectin-like receptor subfamily I member 1 7.5078 0.0000
4 ENSMUSG00000020706 Ftsj3 pre-rRNA processing protein FTSJ3 7.4527 0.0000
5 ENSMUSG00000030720 Cln3 Battenin 7.2527 0.0000
6 ENSMUSG00000098540 Mir7059 microRNA 7059 7.2527 0.0000
7 ENSMUSG00000078280 Tas2r122 NA 7.1699 0.0000
8 ENSMUSG00000079626 Rhox7b NA 7.1466 0.0000
9 ENSMUSG00000085839 Gm15949 predicted gene 15949 7.0589 0.0000
10 ENSMUSG00000070461 9230112E08Rik RIKEN cDNA 9230112E08 gene 7.0423 0.0000

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
50998 ENSMUSG00000112544 Gm48089 predicted gene, 48089 -6.5875 0.0000
50997 ENSMUSG00000112384 Gm34921 predicted gene, 34921 -6.5875 0.0000
50996 ENSMUSG00000110013 1190028D05Rik RIKEN cDNA 1190028D05 gene -6.5850 0.0006
50995 ENSMUSG00000027811 4930579G24Rik Uncharacterized -6.5850 0.0000
50994 ENSMUSG00000063328 Gm9396 predicted gene 9396 -6.5798 0.0000
50993 ENSMUSG00000018160 Med1 Mediator of RNA polymerase II transcription subunit 1 -6.5785 0.0000
50992 ENSMUSG00000027171 Prrg4 proline rich Gla (G-carboxyglutamic acid) 4 (transmembrane) -6.5677 0.0000
50991 ENSMUSG00000024871 Doc2g NA -6.5449 0.0000
50990 ENSMUSG00000028072 Ntrk1 High affinity nerve growth factor receptor -6.5431 0.0000
50989 ENSMUSG00000023882 Zfp54 zinc finger protein 54 -6.5412 0.0000

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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