SHOGoiN Cell Methylome: GSM1147593

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM1147593


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5030203000000000000000-761Sequence Read ArchiveSRP023116SRP023116_M10Single cell methylome landscapes of mouse embryonic stem cells and early embryos analyzed by reduced representation bisulfite sequencingMethylomeMetaphase II oocyteMouseGenitaliaBisulfite-Seq (RRBS)HiSeq 2000Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSMUSG00000055670 Zzef1 zinc finger, ZZ-type with EF hand domain 1 7.9744 0.0000
2 ENSMUSG00000022031 Elp3 elongator acetyltransferase complex subunit 3 7.9687 0.0000
3 ENSMUSG00000057454 Lypd3 Ly6/Plaur domain containing 3 7.9009 0.0000
4 ENSMUSG00000102862 Gm37640 predicted gene, 37640 7.9009 0.0000
5 ENSMUSG00000061065 H2al1o H2A histone family member L1O 7.8642 0.0000
6 ENSMUSG00000098212 Gm38706 predicted gene, 38706 7.7611 0.0000
7 ENSMUSG00000085376 Gm14508 predicted gene 14508 7.7376 0.0000
8 ENSMUSG00000038751 Ptk6 PTK6 protein tyrosine kinase 6 7.7108 0.0000
9 ENSMUSG00000028671 Gale galactose-4-epimerase, UDP 7.7107 0.0000
10 ENSMUSG00000065523 Mir192 microRNA 192 7.6962 0.0000

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
51076 ENSMUSG00000025907 Rb1cc1 RB1-inducible coiled-coil 1 -7.5415 0.0000
51075 ENSMUSG00000024750 Zfand5 zinc finger, AN1-type domain 5 -7.5408 0.0000
51074 ENSMUSG00000025737 Wdr24 WD repeat domain 24 -7.5400 0.0000
51073 ENSMUSG00000025736 Jmjd8 jumonji domain containing 8 -7.5400 0.0000
51072 ENSMUSG00000110926 NA -7.5297 0.0000
51071 ENSMUSG00000032314 Etfa electron transferring flavoprotein, alpha polypeptide -7.5297 0.0000
51070 ENSMUSG00000052759 Gpr25 G protein-coupled receptor 25 -7.5213 0.0000
51069 ENSMUSG00000030351 Tspan11 tetraspanin 11 -7.5157 0.0000
51068 ENSMUSG00000018334 Ksr1 kinase suppressor of ras 1 -7.5126 0.0000
51067 ENSMUSG00000035561 Aldh1b1 aldehyde dehydrogenase 1 family, member B1 -7.5115 0.0000

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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