SHOGoiN Cell Methylome: GSM1147593

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM1147593


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5030203000000000000000-761Sequence Read ArchiveSRP023116SRP023116_M10Single cell methylome landscapes of mouse embryonic stem cells and early embryos analyzed by reduced representation bisulfite sequencingMethylomeMetaphase II oocyteMouseGenitaliaBisulfite-Seq (RRBS)HiSeq 2000Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSMUSG00000055670 Zzef1 zinc finger, ZZ-type with EF hand domain 1 7.9744 0.0000
2 ENSMUSG00000022031 Elp3 Elongator complex protein 3 7.9687 0.0000
3 ENSMUSG00000057454 Lypd3 Ly6/PLAUR domain-containing protein 3 7.9009 0.0000
4 ENSMUSG00000102862 Gm37640 predicted gene, 37640 7.9009 0.0000
5 ENSMUSG00000061065 H2al1o NA 7.8642 0.0000
6 ENSMUSG00000098212 Gm38706 predicted gene, 38706 7.7611 0.0000
7 ENSMUSG00000085376 Gm14508 predicted gene 14508 7.7376 0.0000
8 ENSMUSG00000038751 Ptk6 PTK6 protein tyrosine kinase 6 7.7108 0.0000
9 ENSMUSG00000028671 Gale Mus musculus galactose-4-epimerase, UDP (Gale), mRNA. 7.7107 0.0000
10 ENSMUSG00000065523 Mir192 microRNA 192 7.6962 0.0000

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
50998 ENSMUSG00000106391 Gm42690 predicted gene 42690 -7.2479 0.0000
50997 ENSMUSG00000065429 Mir345 microRNA 345 -7.2365 0.0000
50996 ENSMUSG00000031314 Taf1 TATA-box binding protein associated factor 1 -7.2288 0.0000
50995 ENSMUSG00000020521 Rnft1 E3 ubiquitin-protein ligase RNFT1 -7.2285 0.0000
50994 ENSMUSG00000020284 1810043G02Rik chromosome 21 open reading frame 2 -7.2276 0.0000
50993 ENSMUSG00000069089 Cdk7 Cyclin-dependent kinase 7 -7.2197 0.0000
50992 ENSMUSG00000098736 Gm27838 predicted gene, 27838 -7.2192 0.0000
50991 ENSMUSG00000096946 Fmr1os NA -7.2192 0.0000
50990 ENSMUSG00000097014 Gm26706 predicted gene, 26706 -7.2086 0.0000
50989 ENSMUSG00000090553 Snrpe small nuclear ribonucleoprotein E -7.2086 0.0000

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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