SHOGoiN Cell Methylome: GSM1147594

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM1147594


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9010000-769Sequence Read ArchiveSRP023116SRP023116_M11Single cell methylome landscapes of mouse embryonic stem cells and early embryos analyzed by reduced representation bisulfite sequencingMethylomeFirst polar body (Zygote)MouseEarly embryonic tissueBisulfite-Seq (RRBS)HiSeq 2000Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSMUSG00000024953 Prdx5 peroxiredoxin 5 7.7814 0.0000
2 ENSMUSG00000038812 Trmt112 tRNA methyltransferase 11-2 7.7814 0.0000
3 ENSMUSG00000063511 Snrnp70 small nuclear ribonucleoprotein 70 (U1) 7.5216 0.0000
4 ENSMUSG00000101398 Gm2617 predicted gene 2617 7.5058 0.0000
5 ENSMUSG00000030785 Cox6a2 cytochrome c oxidase subunit VIa polypeptide 2 7.4998 0.0000
6 ENSMUSG00000045374 Wdr81 WD repeat domain 81 7.4660 0.0000
7 ENSMUSG00000089627 Gm16228 predicted gene 16228 7.2574 0.0000
8 ENSMUSG00000026219 Trip12 thyroid hormone receptor interactor 12 7.1997 0.0000
9 ENSMUSG00000038564 Ift172 intraflagellar transport 172 7.0875 0.0000
10 ENSMUSG00000029470 P2rx4 purinergic receptor P2X, ligand-gated ion channel 4 7.0839 0.0000

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
51076 ENSMUSG00000037788 Vopp1 vesicular, overexpressed in cancer, prosurvival protein 1 -7.1246 0.0000
51075 ENSMUSG00000099286 Mir7235 microRNA 7235 -7.1207 0.0000
51074 ENSMUSG00000037376 Trmt6 tRNA methyltransferase 6 -7.1172 0.0000
51073 ENSMUSG00000005936 Kctd20 potassium channel tetramerisation domain containing 20 -7.1151 0.0000
51072 ENSMUSG00000039519 Cyp7b1 cytochrome P450, family 7, subfamily b, polypeptide 1 -7.1114 0.0000
51071 ENSMUSG00000055653 Gpc3 glypican 3 -7.1099 0.0000
51070 ENSMUSG00000024037 Wdr4 WD repeat domain 4 -7.1073 0.0000
51069 ENSMUSG00000032415 Ube2cbp ubiquitin-conjugating enzyme E2C binding protein -7.0894 0.0000
51068 ENSMUSG00000094763 Gm1647 predicted gene 1647 -7.0875 0.0000
51067 ENSMUSG00000084407 Gm14018 predicted gene 14018 -7.0875 0.0000

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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