SHOGoiN Cell Methylome: GSM1147594

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM1147594


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7010000000000000000000-769Sequence Read ArchiveSRP023116SRP023116_M11Single cell methylome landscapes of mouse embryonic stem cells and early embryos analyzed by reduced representation bisulfite sequencingMethylomeFirst polar body (Zygote)MouseEarly embryonic tissueBisulfite-Seq (RRBS)HiSeq 2000Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSMUSG00000024953 Prdx5 peroxiredoxin 5 7.7814 0.0000
2 ENSMUSG00000038812 Trmt112 tRNA methyltransferase 11-2 7.7814 0.0000
3 ENSMUSG00000063511 Snrnp70 small nuclear ribonucleoprotein 70 (U1) 7.5216 0.0000
4 ENSMUSG00000101398 Gm2617 predicted gene 2617 7.5058 0.0000
5 ENSMUSG00000030785 Cox6a2 Cytochrome c oxidase subunit 6A2, mitochondrial 7.4998 0.0000
6 ENSMUSG00000045374 Wdr81 WD repeat domain 81 7.4660 0.0000
7 ENSMUSG00000089627 Gm16228 predicted gene 16228 7.2574 0.0000
8 ENSMUSG00000026219 Trip12 thyroid hormone receptor interactor 12 7.1997 0.0000
9 ENSMUSG00000038564 Ift172 Intraflagellar transport 7.0875 0.0000
10 ENSMUSG00000029470 P2rx4 purinergic receptor P2X 4 7.0839 0.0000

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
50998 ENSMUSG00000024064 Galnt14 Polypeptide N-acetylgalactosaminyltransferase 14 -6.8252 0.0000
50997 ENSMUSG00000109427 Gm45845 predicted gene 45845 -6.8228 0.0000
50996 ENSMUSG00000083185 Olfr1146-ps1 olfactory receptor 1146, pseudogene 1 -6.8201 0.0000
50995 ENSMUSG00000015759 Cnih1 1 -6.8107 0.0000
50994 ENSMUSG00000033918 Parl Presenilins-associated rhomboid-like protein, mitochondrial P-beta -6.8088 0.0000
50993 ENSMUSG00000019961 Tmpo thymopoietin -6.8038 0.0000
50992 ENSMUSG00000053091 Lins1 1 -6.8030 0.0000
50991 ENSMUSG00000080573 Mir467f microRNA 467f -6.8029 0.0000
50990 ENSMUSG00000044071 Fam19a2 protein FAM19A2 isoform 2 -6.7902 0.0000
50989 ENSMUSG00000007656 Arpp19 Mus musculus cAMP-regulated phosphoprotein 19 (Arpp19), transcript variant 6, mRNA. -6.7859 0.0000

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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