SHOGoiN Cell Methylome: GSM1147595

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM1147595


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7010000000000000000000-769Sequence Read ArchiveSRP023116SRP023116_M12Single cell methylome landscapes of mouse embryonic stem cells and early embryos analyzed by reduced representation bisulfite sequencingMethylomeFirst polar body (Zygote)MouseEarly embryonic tissueBisulfite-Seq (RRBS)HiSeq 2000Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSMUSG00000090095 Rpl29-ps1 ribosomal protein L29, pseudogene 1 8.5699 0.0000
2 ENSMUSG00000092443 Gm20726 predicted gene, 20726 8.5509 0.0000
3 ENSMUSG00000091306 Gm17606 predicted gene, 17606 8.5229 0.0000
4 ENSMUSG00000028280 Gabrr1 gamma-aminobutyric acid (GABA) C receptor, subunit rho 1 8.4676 0.0000
5 ENSMUSG00000073255 Gm14632 predicted gene 14632 8.2992 0.0000
6 ENSMUSG00000053898 Ech1 enoyl coenzyme A hydratase 1, peroxisomal 8.2605 0.0000
7 ENSMUSG00000055818 A230083G16Rik RIKEN cDNA A230083G16 gene 8.1983 0.0000
8 ENSMUSG00000036835 Psenen presenilin enhancer gamma secretase subunit 8.1342 0.0000
9 ENSMUSG00000036845 Lin37 lin-37 homolog (C. elegans) 8.1342 0.0000
10 ENSMUSG00000078765 U2af1l4 U2 small nuclear RNA auxiliary factor 1-like 4 8.1342 0.0000

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
51076 ENSMUSG00000105603 Gm32996 predicted gene, 32996 -7.4699 0.0000
51075 ENSMUSG00000086962 Gm12248 predicted gene 12248 -7.4676 0.0000
51074 ENSMUSG00000084298 Gm14331 predicted gene 14331 -7.4676 0.0000
51073 ENSMUSG00000070574 2310016G11Rik RIKEN cDNA 2310016G11 gene -7.4621 0.0000
51072 ENSMUSG00000014039 Prdm15 PR domain containing 15 -7.4605 0.0000
51071 ENSMUSG00000051695 Pcbp1 poly(rC) binding protein 1 -7.4583 0.0000
51070 ENSMUSG00000025237 Parp6 poly (ADP-ribose) polymerase family, member 6 -7.4476 0.0000
51069 ENSMUSG00000039967 Zfp292 zinc finger protein 292 -7.4469 0.0000
51068 ENSMUSG00000112302 NA -7.4457 0.0000
51067 ENSMUSG00000047454 Gphn gephyrin -7.4457 0.0000

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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