SHOGoiN Cell Methylome: GSM1147595

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM1147595


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7010000000000000000000-769Sequence Read ArchiveSRP023116SRP023116_M12Single cell methylome landscapes of mouse embryonic stem cells and early embryos analyzed by reduced representation bisulfite sequencingMethylomeFirst polar body (Zygote)MouseEarly embryonic tissueBisulfite-Seq (RRBS)HiSeq 2000Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSMUSG00000090095 Rpl29-ps1 ribosomal protein L29, pseudogene 1 8.5699 0.0000
3 ENSMUSG00000091306 Gm17606 NA 8.5229 0.0000
4 ENSMUSG00000028280 Gabrr1 Gamma-aminobutyric acid receptor subunit rho-1 8.4676 0.0000
5 ENSMUSG00000073255 Gm14632 NA 8.2992 0.0000
6 ENSMUSG00000053898 Ech1 Delta(3,5)-Delta(2,4)-dienoyl-CoA isomerase, mitochondrial 8.2605 0.0000
7 ENSMUSG00000055818 A230083G16Rik RIKEN cDNA A230083G16 gene 8.1983 0.0000
8 ENSMUSG00000036835 Psenen Gamma-secretase subunit PEN-2 8.1342 0.0000
9 ENSMUSG00000036845 Lin37 lin-37 DREAM MuvB core complex component 8.1342 0.0000
10 ENSMUSG00000078765 U2af1l4 U2 small nuclear RNA auxiliary factor 1-like 4 8.1342 0.0000
50989 ENSMUSG00000021501 Caml Calcium signal-modulating cyclophilin ligand -7.2100 0.0000

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
50998 ENSMUSG00000025239 Limd1 LIM domain-containing protein 1 -7.2472 0.0000
50997 ENSMUSG00000022095 Fam160b2 Protein FAM160B2 -7.2443 0.0000
50996 ENSMUSG00000107601 Gm2651 predicted gene 2651 -7.2368 0.0000
50995 ENSMUSG00000074925 Ptar1 protein prenyltransferase alpha subunit repeat containing 1 -7.2334 0.0000
50994 ENSMUSG00000078796 Zfp541 zinc finger protein 541 -7.2288 0.0000
50993 ENSMUSG00000028718 Stil SCL-interrupting locus protein homolog isoform 5 -7.2240 0.0000
50992 ENSMUSG00000001891 Ugp2 UDP-glucose pyrophosphorylase 2 -7.2229 0.0000
50991 ENSMUSG00000097843 Gm26755 predicted gene, 26755 -7.2192 0.0000
50990 ENSMUSG00000051890 Klhdc1 Kelch domain-containing protein 1 -7.2177 0.0000
50989 ENSMUSG00000021501 Caml Calcium signal-modulating cyclophilin ligand -7.2100 0.0000

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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