SHOGoiN Cell Methylome: GSM1147596

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM1147596


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5090101000001000000000-236Sequence Read ArchiveSRP023116SRP023116_M13Single cell methylome landscapes of mouse embryonic stem cells and early embryos analyzed by reduced representation bisulfite sequencingMethylomeSpermMouseGenitaliaBisulfite-Seq (RRBS)HiSeq 2000Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSMUSG00000011118 Panx3 Pannexin-3 8.2877 0.0000
2 ENSMUSG00000082312 Gm11996 predicted gene 11996 8.0980 0.0000
3 ENSMUSG00000028069 Gpatch4 G patch domain-containing protein 4 8.0112 0.0000
4 ENSMUSG00000107931 Gm44475 predicted gene, 44475 7.9188 0.0000
5 ENSMUSG00000096941 Gm26720 predicted gene, 26720 7.8948 0.0000
6 ENSMUSG00000071151 Gm4799 predicted gene 4799 7.8455 0.0000
7 ENSMUSG00000070972 Dnajc25 DnaJ homolog subfamily C member 25 7.7682 0.0000
8 ENSMUSG00000092345 Gm20503 DNAJC25-GNG10 readthrough 7.7682 0.0000
9 ENSMUSG00000038044 Cct8l1 chaperonin containing TCP1, subunit 8 (theta)-like 1 7.7616 0.0000
10 ENSMUSG00000037400 Atp11b ATPase, class VI, type 11B 7.7415 0.0000

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
50998 ENSMUSG00000102612 Gm37845 predicted gene, 37845 -7.1764 0.0000
50997 ENSMUSG00000102537 Gm37224 predicted gene, 37224 -7.1764 0.0000
50996 ENSMUSG00000049576 Zfa-ps zinc finger protein, autosomal, pseudogene -7.1725 0.0000
50995 ENSMUSG00000084543 Gm23184 predicted gene, 23184 -7.1714 0.0000
50994 ENSMUSG00000020614 Fam20a Pseudokinase FAM20A -7.1676 0.0000
50993 ENSMUSG00000046714 Foxc2 Forkhead box protein C2 -7.1626 0.0000
50992 ENSMUSG00000085653 Gm15179 predicted gene 15179 -7.1599 0.0000
50991 ENSMUSG00000020029 Nudt4 Mus musculus nudix (nucleoside diphosphate linked moiety X)-type motif 4 (Nudt4), transcript variant 1, mRNA. -7.1595 0.0000
50990 ENSMUSG00000010825 Grid2ip Mus musculus glutamate receptor, ionotropic, delta 2 (Grid2) interacting protein 1 (Grid2ip), transcript variant 3, mRNA. -7.1565 0.0000
50989 ENSMUSG00000087993 Mir1982 microRNA 1982 -7.1562 0.0000

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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