SHOGoiN Cell Methylome: GSM1147596

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM1147596


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5090101000001000000000-236Sequence Read ArchiveSRP023116SRP023116_M13Single cell methylome landscapes of mouse embryonic stem cells and early embryos analyzed by reduced representation bisulfite sequencingMethylomeSpermMouseGenitaliaBisulfite-Seq (RRBS)HiSeq 2000Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSMUSG00000011118 Panx3 pannexin 3 8.2877 0.0000
2 ENSMUSG00000082312 Gm11996 predicted gene 11996 8.0980 0.0000
3 ENSMUSG00000028069 Gpatch4 G patch domain containing 4 8.0112 0.0000
4 ENSMUSG00000107931 Gm44475 predicted gene, 44475 7.9188 0.0000
5 ENSMUSG00000096941 Gm26720 predicted gene, 26720 7.8948 0.0000
6 ENSMUSG00000071151 Gm4799 predicted gene 4799 7.8455 0.0000
7 ENSMUSG00000070972 Dnajc25 DnaJ heat shock protein family (Hsp40) member C25 7.7682 0.0000
8 ENSMUSG00000092345 Gm20503 predicted gene 20503 7.7682 0.0000
9 ENSMUSG00000038044 Cct8l1 chaperonin containing TCP1, subunit 8 (theta)-like 1 7.7616 0.0000
10 ENSMUSG00000037400 Atp11b ATPase, class VI, type 11B 7.7415 0.0000

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
51076 ENSMUSG00000033885 Pxk PX domain containing serine/threonine kinase -7.5054 0.0000
51075 ENSMUSG00000000365 Rnf17 ring finger protein 17 -7.4977 0.0000
51074 ENSMUSG00000099162 Gm27168 predicted gene 27168 -7.4838 0.0000
51073 ENSMUSG00000057858 Fam204a family with sequence similarity 204, member A -7.4792 0.0000
51072 ENSMUSG00000027983 Cyp2u1 cytochrome P450, family 2, subfamily u, polypeptide 1 -7.4747 0.0000
51071 ENSMUSG00000099481 Xndc1 Xrcc1 N-terminal domain containing 1 -7.4659 0.0000
51070 ENSMUSG00000070425 Xntrpc Xndc1-transient receptor potential cation channel, subfamily C, member 2 readthrough -7.4659 0.0000
51069 ENSMUSG00000074039 4930520O04Rik RIKEN cDNA 4930520O04 gene -7.4624 0.0000
51068 ENSMUSG00000032431 Crtap cartilage associated protein -7.4624 0.0000
51067 ENSMUSG00000108695 Gm2511 predicted gene 2511 -7.4498 0.0000

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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