SHOGoiN Cell Methylome: GSM1147599

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM1147599


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5090101000001000000000-236Sequence Read ArchiveSRP023116SRP023116_M16Single cell methylome landscapes of mouse embryonic stem cells and early embryos analyzed by reduced representation bisulfite sequencingMethylomeSpermMouseGenitaliaBisulfite-Seq (RRBS)HiSeq 2000Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSMUSG00000090095 Rpl29-ps1 ribosomal protein L29, pseudogene 1 9.7797 0.0000
2 ENSMUSG00000029179 Zcchc4 zinc finger, CCHC domain containing 4 9.1284 0.0000
3 ENSMUSG00000067750 Khdc1a KH domain containing 1A 8.9773 0.0000
4 ENSMUSG00000086194 Gm16329 predicted gene 16329 8.9773 0.0000
5 ENSMUSG00000110372 Gm8096 predicted gene 8096 8.8880 0.0000
6 ENSMUSG00000109657 1700008N11Rik RIKEN cDNA 1700008N11 gene 8.8424 0.0000
7 ENSMUSG00000078439 Smim24 small integral membrane protein 24 8.6245 0.0000
8 ENSMUSG00000078440 Dohh deoxyhypusine hydroxylase/monooxygenase 8.6245 0.0000
9 ENSMUSG00000098811 Mir6913 microRNA 6913 8.6245 0.0000
10 ENSMUSG00000074570 Cass4 Cas scaffolding protein family member 4 8.5812 0.0000

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
51076 ENSMUSG00000105979 Gm43411 predicted gene 43411 -9.1317 0.0000
51075 ENSMUSG00000045316 Fahd1 fumarylacetoacetate hydrolase domain containing 1 -9.1233 0.0000
51074 ENSMUSG00000048106 4632415L05Rik RIKEN cDNA 4632415L05 gene -9.1215 0.0000
51073 ENSMUSG00000103845 Gm19026 predicted gene, 19026 -9.0838 0.0000
51072 ENSMUSG00000024805 Pcgf5 polycomb group ring finger 5 -9.0832 0.0000
51071 ENSMUSG00000073144 4930599N23Rik RIKEN cDNA 4930599N23 gene -9.0793 0.0000
51070 ENSMUSG00000038507 Parp12 poly (ADP-ribose) polymerase family, member 12 -9.0793 0.0000
51069 ENSMUSG00000037172 E330009J07Rik RIKEN cDNA E330009J07 gene -9.0654 0.0000
51068 ENSMUSG00000029594 Rbm19 RNA binding motif protein 19 -9.0568 0.0000
51067 ENSMUSG00000091476 Gm16432 predicted gene 16432 -9.0498 0.0000

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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