SHOGoiN Cell Methylome: GSM1147601

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM1147601


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7010000000000000000000-769Sequence Read ArchiveSRP023116SRP023116_M18Single cell methylome landscapes of mouse embryonic stem cells and early embryos analyzed by reduced representation bisulfite sequencingMethylomeMale pronucleus (Zygote)MouseEarly embryonic tissueBisulfite-Seq (RRBS)HiSeq 2000Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSMUSG00000110525 Gm45893 predicted gene 45893 7.9715 0.0000
2 ENSMUSG00000064763 Gm23515 predicted gene, 23515 7.4346 0.0000
3 ENSMUSG00000017737 Mmp9 Matrix metalloproteinase-9 7.0187 0.0000
4 ENSMUSG00000088924 Gm24298 predicted gene, 24298 6.9658 0.0000
5 ENSMUSG00000025515 Muc2 NA 6.9307 0.0000
6 ENSMUSG00000006529 Itih1 Inter-alpha-trypsin inhibitor heavy chain H1 6.9189 0.0000
7 ENSMUSG00000021918 Nek4 NIMA related kinase 4 6.9189 0.0000
8 ENSMUSG00000099193 Gm27374 predicted gene, 27374 6.9189 0.0000
9 ENSMUSG00000110117 Gm17990 predicted gene, 17990 6.7096 0.0000
10 ENSMUSG00000100827 Gm29069 predicted gene 29069 6.7004 0.0000

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
50998 ENSMUSG00000062590 Armc9 LisH domain-containing protein ARMC9 -6.4638 0.0000
50997 ENSMUSG00000018425 Dhx40 Probable ATP-dependent RNA helicase DHX40 -6.4620 0.0000
50996 ENSMUSG00000080681 Gm23990 predicted gene, 23990 -6.4579 0.0000
50995 ENSMUSG00000087612 A230005M16Rik RIKEN cDNA A230005M16 gene -6.4551 0.0000
50994 ENSMUSG00000096740 Lbhd1 NA -6.4429 0.0000
50993 ENSMUSG00000093314 Mir5136 microRNA 5136 -6.4429 0.0000
50992 ENSMUSG00000074127 Cmtm2a CKLF-like MARVEL transmembrane domain-containing protein 2A -6.4429 0.0000
50991 ENSMUSG00000071653 1810009A15Rik Uncharacterized -6.4429 0.0000
50990 ENSMUSG00000070167 Snora57 small nucleolar RNA, H/ACA box 57 -6.4429 0.0000
50989 ENSMUSG00000077507 Gm24235 predicted gene, 24235 -6.4428 0.0000

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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