SHOGoiN Cell Methylome: GSM1147601

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM1147601


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7010000000000000000000-769Sequence Read ArchiveSRP023116SRP023116_M18Single cell methylome landscapes of mouse embryonic stem cells and early embryos analyzed by reduced representation bisulfite sequencingMethylomeMale pronucleus (Zygote)MouseEarly embryonic tissueBisulfite-Seq (RRBS)HiSeq 2000Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSMUSG00000110525 Gm45893 predicted gene 45893 7.9715 0.0000
2 ENSMUSG00000064763 Gm23515 predicted gene, 23515 7.4346 0.0000
3 ENSMUSG00000017737 Mmp9 matrix metallopeptidase 9 7.0187 0.0000
4 ENSMUSG00000088924 Gm24298 predicted gene, 24298 6.9658 0.0000
5 ENSMUSG00000025515 Muc2 mucin 2 6.9307 0.0000
6 ENSMUSG00000006529 Itih1 inter-alpha trypsin inhibitor, heavy chain 1 6.9189 0.0000
7 ENSMUSG00000021918 Nek4 NIMA (never in mitosis gene a)-related expressed kinase 4 6.9189 0.0000
8 ENSMUSG00000099193 Gm27374 predicted gene, 27374 6.9189 0.0000
9 ENSMUSG00000110117 Gm17990 predicted gene, 17990 6.7096 0.0000
10 ENSMUSG00000100827 Gm29069 predicted gene 29069 6.7004 0.0000

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
51076 ENSMUSG00000020982 Nemf nuclear export mediator factor -6.8489 0.0000
51075 ENSMUSG00000095385 D630033O11Rik RIKEN cDNA D630033O11 gene -6.8447 0.0000
51074 ENSMUSG00000091133 Gm17108 predicted gene 17108 -6.8442 0.0000
51073 ENSMUSG00000041112 Elmo1 engulfment and cell motility 1 -6.8413 0.0000
51072 ENSMUSG00000085881 Gm15912 predicted gene 15912 -6.8392 0.0000
51071 ENSMUSG00000029538 Srsf9 serine/arginine-rich splicing factor 9 -6.8291 0.0000
51070 ENSMUSG00000015189 Casd1 CAS1 domain containing 1 -6.8258 0.0000
51069 ENSMUSG00000092724 Gm25677 predicted gene, 25677 -6.8072 0.0000
51068 ENSMUSG00000061286 Exosc5 exosome component 5 -6.8065 0.0000
51067 ENSMUSG00000048834 Vstm2a V-set and transmembrane domain containing 2A -6.8055 0.0000

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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