SHOGoiN Cell Methylome: GSM1147602

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM1147602


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7010000000000000000000-769Sequence Read ArchiveSRP023116SRP023116_M19Single cell methylome landscapes of mouse embryonic stem cells and early embryos analyzed by reduced representation bisulfite sequencingMethylomeFemale pronucleus (Zygote)MouseEarly embryonic tissueBisulfite-Seq (RRBS)HiSeq 2000Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSMUSG00000098281 Gm27529 predicted gene, 27529 10.3725 0.0000
2 ENSMUSG00000098276 Mir6358 microRNA 6358 9.2372 0.0000
3 ENSMUSG00000098284 A330093E20Rik RIKEN cDNA A330093E20 gene 9.1997 0.0000
4 ENSMUSG00000047369 Dnah14 NA 9.0112 0.0000
5 ENSMUSG00000090658 Prss47 NA 8.9099 0.0000
6 ENSMUSG00000066771 Gm5614 predicted gene 5614 8.9089 0.0000
7 ENSMUSG00000076128 Mir686 microRNA 686 8.7842 0.0000
8 ENSMUSG00000109218 Gm44872 predicted gene 44872 8.7020 0.0000
9 ENSMUSG00000049728 Zfp668 zinc finger protein 668 8.6841 0.0000
10 ENSMUSG00000049739 Zfp646 zinc finger protein 646 8.6841 0.0000

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
50998 ENSMUSG00000002006 Pdzd4 PDZ domain-containing protein 4 -8.3027 0.0000
50997 ENSMUSG00000110091 Gm39115 predicted, 39115 -8.2992 0.0000
50996 ENSMUSG00000021760 Gpx8 Probable glutathione peroxidase 8 -8.2977 0.0000
50995 ENSMUSG00000069041 Slc25a31 solute carrier family 25 (mitochondrial carrier; adenine nucleotide translocator), member 31 -8.2946 0.0000
50994 ENSMUSG00000040632 Nrl Neural retina-specific leucine zipper protein -8.2904 0.0000
50993 ENSMUSG00000028982 Slc25a33 Solute carrier family 25 member 33 -8.2761 0.0000
50992 ENSMUSG00000111809 NA -8.2724 0.0000
50991 ENSMUSG00000106418 Gm44397 predicted gene, 44397 -8.2710 0.0000
50990 ENSMUSG00000099088 Gm27920 predicted gene, 27920 -8.2681 0.0000
50989 ENSMUSG00000027498 Cstf1 Cleavage stimulation factor subunit 1 -8.2680 0.0000

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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