SHOGoiN Cell Methylome: GSM1147604

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM1147604


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7010000000000000000000-769Sequence Read ArchiveSRP023116SRP023116_M21Single cell methylome landscapes of mouse embryonic stem cells and early embryos analyzed by reduced representation bisulfite sequencingMethylomeFemale pronucleus (Zygote)MouseEarly embryonic tissueBisulfite-Seq (RRBS)HiSeq 2000Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSMUSG00000097152 Gm26515 predicted gene, 26515 6.7279 0.0000
2 ENSMUSG00000110111 Gm7786 predicted gene 7786 6.7279 0.0000
3 ENSMUSG00000023274 Cd4 T-cell surface glycoprotein CD4 6.6380 0.0000
4 ENSMUSG00000110170 St6galnac2 ST6 (alpha-N-acetyl-neuraminyl-2,3-beta-galactosyl-1,3)-N-acetylgalactosaminide alpha-2,6-sialyltransferase 2 6.2479 0.0000
5 ENSMUSG00000084191 Gm15167 predicted gene 15167 6.1699 0.0000
6 ENSMUSG00000093409 Gm25193 predicted gene, 25193 6.1293 0.0000
7 ENSMUSG00000097731 2700016F22Rik RIKEN cDNA 2700016F22 gene 6.0661 0.0000
8 ENSMUSG00000102928 Ighv1-46 immunoglobulin heavy variable V1-46 6.0661 0.0000
9 ENSMUSG00000037627 Rgs22 Regulator of G-protein signaling 22 6.0444 0.0000
10 ENSMUSG00000054446 Cpa1 Carboxypeptidase A1 6.0444 0.0000

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
50998 ENSMUSG00000035382 Pcsk7 Proprotein convertase subtilisin/kexin type 7 -5.9133 0.0000
50997 ENSMUSG00000002365 Snx9 sorting nexin 9 -5.9102 0.0000
50996 ENSMUSG00000063935 Zar1 zygote arrest 1 -5.9098 0.0000
50995 ENSMUSG00000060204 Gm5868 NA -5.9098 0.0000
50994 ENSMUSG00000036777 Anln Anillin -5.9069 0.0000
50993 ENSMUSG00000053773 Rdh8 retinol dehydrogenase 8 (all-trans) -5.9069 0.0000
50992 ENSMUSG00000028603 Scp2 sterol carrier protein 2, liver -5.9069 0.0000
50991 ENSMUSG00000004098 Col5a3 collagen, type V, alpha 3 -5.9069 0.0000
50990 ENSMUSG00000069712 4930444G20Rik RIKEN cDNA 4930444G20 gene -5.9042 0.0000
50989 ENSMUSG00000078532 Nkain1 Sodium/potassium-transporting ATPase subunit beta-1-interacting protein 1 -5.9016 0.0000

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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