SHOGoiN Cell Methylome: GSM1147606

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM1147606


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7010000000000000000000-769Sequence Read ArchiveSRP023116SRP023116_M23Single cell methylome landscapes of mouse embryonic stem cells and early embryos analyzed by reduced representation bisulfite sequencingMethylomeFemale pronucleus (Zygote)MouseEarly embryonic tissueBisulfite-Seq (RRBS)HiSeq 2000Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSMUSG00000022683 Pla2g10 phospholipase A2, group X 7.4512 0.0000
2 ENSMUSG00000086550 Pla2g10os phospholipase A2, group X, opposite strand 7.4512 0.0000
3 ENSMUSG00000088236 Gm25425 predicted gene, 25425 7.2288 0.0000
4 ENSMUSG00000024220 Zfp523 zinc finger protein 523 7.2185 0.0000
5 ENSMUSG00000044312 Neurog3 Neurogenin-3 7.2082 0.0000
6 ENSMUSG00000082341 Gm14143 predicted gene 14143 7.1799 0.0000
7 ENSMUSG00000029608 Rph3a Rabphilin-3A 6.9396 0.0000
8 ENSMUSG00000025221 Kcnip2 Kv channel-interacting protein 2 6.9069 0.0000
9 ENSMUSG00000057945 Gm17136 predicted gene 17136 6.8455 0.0000
10 ENSMUSG00000110701 Gm6013 predicted gene 6013 6.8150 0.0000

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
50998 ENSMUSG00000105836 Gm17954 predicted gene, 17954 -6.3012 0.0000
50997 ENSMUSG00000027981 Rnpc3 RNA-binding protein 40 -6.3012 0.0000
50996 ENSMUSG00000026502 Desi2 Desumoylating isopeptidase 2 -6.3001 0.0000
50995 ENSMUSG00000109901 Chmp1b Charged multivesicular body protein 1b-1 -6.2999 0.0000
50994 ENSMUSG00000053070 9230110C19Rik RIKEN cDNA 9230110C19 gene -6.2997 0.0000
50993 ENSMUSG00000035828 Pim3 proviral integration site 3 -6.2992 0.0000
50992 ENSMUSG00000110117 Gm17990 predicted gene, 17990 -6.2977 0.0000
50991 ENSMUSG00000110926 Gm5917 predicted gene 5917 -6.2958 0.0000
50990 ENSMUSG00000032314 Etfa Electron transfer flavoprotein subunit alpha, mitochondrial -6.2958 0.0000
50989 ENSMUSG00000028524 Sgip1 SH3-containing GRB2-like protein 3-interacting protein 1 -6.2951 0.0000

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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