SHOGoiN Cell Methylome: GSM1147610

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM1147610


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7010000000000000000000-769Sequence Read ArchiveSRP023116SRP023116_M27Single cell methylome landscapes of mouse embryonic stem cells and early embryos analyzed by reduced representation bisulfite sequencingMethylomeFemale pronucleus (Zygote)MouseEarly embryonic tissueBisulfite-Seq (RRBS)HiSeq 2000Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSMUSG00000004018 Fancl Fanconi anemia, complementation group L 6.4594 0.0000
2 ENSMUSG00000041346 Wrap53 WD repeat containing, antisense to Trp53 6.4594 0.0000
3 ENSMUSG00000050147 F2rl3 coagulation factor II (thrombin) receptor-like 3 6.4594 0.0000
4 ENSMUSG00000092176 Gm20460 predicted gene 20460 6.2668 0.0000
5 ENSMUSG00000077844 Gm22231 predicted gene, 22231 6.1598 0.0000
6 ENSMUSG00000105496 Mir7004 microRNA 7004 6.0966 0.0000
7 ENSMUSG00000024424 Ttc39c tetratricopeptide repeat domain 39C 6.0472 0.0000
8 ENSMUSG00000099162 Gm27168 predicted gene 27168 6.0444 0.0000
9 ENSMUSG00000021957 Tkt transketolase 6.0000 0.0000
10 ENSMUSG00000093156 Mir3076 microRNA 3076 6.0000 0.0000

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
51076 ENSMUSG00000106175 Gm44313 predicted gene, 44313 -6.0086 0.0000
51075 ENSMUSG00000080712 Hist3h2bb-ps histone cluster 3, H2bb, pseudogene -6.0086 0.0000
51074 ENSMUSG00000080152 Gm12260 predicted gene 12260 -6.0086 0.0000
51073 ENSMUSG00000078851 Hist3h2a histone cluster 3, H2a -6.0086 0.0000
51072 ENSMUSG00000036964 Trim17 tripartite motif-containing 17 -6.0086 0.0000
51071 ENSMUSG00000034435 Tmem30b transmembrane protein 30B -6.0037 0.0000
51070 ENSMUSG00000096042 Vmn2r125 vomeronasal 2, receptor 125 -6.0000 0.0001
51069 ENSMUSG00000036737 Oxsr1 oxidative-stress responsive 1 -5.9976 0.0000
51068 ENSMUSG00000043885 Slc36a4 solute carrier family 36 (proton/amino acid symporter), member 4 -5.9932 0.0000
51067 ENSMUSG00000061650 Med9 mediator complex subunit 9 -5.9773 0.0140

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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