SHOGoiN Cell Methylome: GSM1147610

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM1147610


Profile download
7010000000000000000000-769Sequence Read ArchiveSRP023116SRP023116_M27Single cell methylome landscapes of mouse embryonic stem cells and early embryos analyzed by reduced representation bisulfite sequencingMethylomeFemale pronucleus (Zygote)MouseEarly embryonic tissueBisulfite-Seq (RRBS)HiSeq 2000Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSMUSG00000004018 Fancl E3 ubiquitin-protein ligase FANCL 6.4594 0.0000
2 ENSMUSG00000041346 Wrap53 WD repeat containing, antisense to Trp53 6.4594 0.0000
3 ENSMUSG00000050147 F2rl3 Proteinase-activated receptor 4 6.4594 0.0000
4 ENSMUSG00000092176 Gm20460 predicted gene 20460 6.2668 0.0000
5 ENSMUSG00000077844 Gm22231 predicted gene, 22231 6.1598 0.0000
6 ENSMUSG00000105496 Mir7004 microRNA 7004 6.0966 0.0000
7 ENSMUSG00000024424 Ttc39c tetratricopeptide repeat domain 39C 6.0472 0.0000
8 ENSMUSG00000099162 Gm27168 predicted gene 27168 6.0444 0.0000
9 ENSMUSG00000021957 Tkt Transketolase 6.0000 0.0000
10 ENSMUSG00000093156 Mir3076 microRNA 3076 6.0000 0.0000

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
50998 ENSMUSG00000078773 Rad54b DNA repair and recombination protein RAD54B -5.7591 0.0000
50997 ENSMUSG00000091780 Sco2 , mitochondrial -5.7549 0.0000
50996 ENSMUSG00000034973 Dopey1 dopey family member 1 -5.7549 0.0000
50995 ENSMUSG00000032415 Ube2cbp ubiquitin-conjugating enzyme E2C binding protein -5.7549 0.0000
50994 ENSMUSG00000107873 Gm19065 predicted gene, 19065 -5.7490 0.0000
50993 ENSMUSG00000097979 Gm4691 predicted gene 4691 -5.7490 0.0000
50992 ENSMUSG00000019913 Sim1 Single-minded homolog 1 -5.7393 0.0000
50991 ENSMUSG00000020431 Adcy1 Adenylate cyclase type 1 -5.7292 0.0000
50990 ENSMUSG00000042269 Fam92b Protein FAM92B -5.7279 0.0000
50989 ENSMUSG00000022212 Cpne6 Copine-6 -5.7279 0.0317

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

full download

Now loading...