SHOGoiN Cell Methylome: GSM1200272

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM1200272


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5090101000001000000000-236Sequence Read ArchiveSRP023116SRP023116_M28Single cell methylome landscapes of mouse embryonic stem cells and early embryos analyzed by reduced representation bisulfite sequencingMethylomeSpermMouseGenitaliaBisulfite-Seq (RRBS)HiSeq 2000Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSMUSG00000081208 Gm11400 predicted gene 11400 7.8658 0.0000
2 ENSMUSG00000078130 Gm11555 NA 7.7211 0.0000
3 ENSMUSG00000004612 Nkg7 natural killer cell granule protein 7 7.6265 0.0000
4 ENSMUSG00000038973 Cldnd2 Claudin domain-containing protein 2 7.6265 0.0000
5 ENSMUSG00000046034 Otulin Ubiquitin thioesterase otulin 7.5925 0.0000
6 ENSMUSG00000066368 Actl11 actin-like 11 7.5924 0.0000
7 ENSMUSG00000053769 Lysmd1 LysM and putative peptidoglycan-binding domain-containing protein 1 7.4388 0.0000
8 ENSMUSG00000092607 Scnm1 Sodium channel modifier 1 7.4388 0.0000
9 ENSMUSG00000098498 Mir8099-1 microRNA 8099-1 7.4388 0.0000
10 ENSMUSG00000105291 Gm18901 predicted gene, 18901 7.2384 0.0000

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
50998 ENSMUSG00000038930 Rccd1 RCC1 domain-containing protein 1 -6.5378 0.0000
50997 ENSMUSG00000053641 Dennd4a DENN domain containing 4A -6.5355 0.0000
50996 ENSMUSG00000062563 Cys1 cystin 1 -6.5344 0.0000
50995 ENSMUSG00000022748 Cmss1 Protein CMSS1 -6.5322 0.0000
50994 ENSMUSG00000029169 Dhx15 Pre-mRNA-splicing factor ATP-dependent RNA helicase DHX15 -6.5290 0.0000
50993 ENSMUSG00000046380 Jrk Jerky protein -6.5209 0.0000
50992 ENSMUSG00000050174 Nudt6 nudix hydrolase 6 -6.5196 0.0000
50991 ENSMUSG00000027722 Spata5 Spermatosis-associated protein 5 -6.5196 0.0000
50990 ENSMUSG00000100211 1700064M15Rik RIKEN cDNA 1700064M15 gene -6.5172 0.0000
50989 ENSMUSG00000028973 Abcb8 ATP-binding cassette, sub-family B (MDR/TAP), member 8 -6.5139 0.0000

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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