SHOGoiN Cell Methylome: GSM1200272

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM1200272


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7030201-236Sequence Read ArchiveSRP023116SRP023116_M28Single cell methylome landscapes of mouse embryonic stem cells and early embryos analyzed by reduced representation bisulfite sequencingMethylomeSpermMouseGenitaliumBisulfite-Seq (RRBS)HiSeq 2000Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSMUSG00000081208 Gm11400 predicted gene 11400 7.8658 0.0000
2 ENSMUSG00000078130 Gm11555 predicted gene 11555 7.7211 0.0000
3 ENSMUSG00000004612 Nkg7 natural killer cell group 7 sequence 7.6265 0.0000
4 ENSMUSG00000038973 Cldnd2 claudin domain containing 2 7.6265 0.0000
5 ENSMUSG00000046034 Otulin OTU deubiquitinase with linear linkage specificity 7.5925 0.0000
6 ENSMUSG00000066368 Actl11 actin-like 11 7.5924 0.0000
7 ENSMUSG00000053769 Lysmd1 LysM, putative peptidoglycan-binding, domain containing 1 7.4388 0.0000
8 ENSMUSG00000092607 Scnm1 sodium channel modifier 1 7.4388 0.0000
9 ENSMUSG00000098498 Mir8099-1 microRNA 8099-1 7.4388 0.0000
10 ENSMUSG00000105291 Gm18901 predicted gene, 18901 7.2384 0.0000

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
51076 ENSMUSG00000096474 Gm5561 predicted gene 5561 -6.9307 0.0000
51075 ENSMUSG00000039358 Drd5 dopamine receptor D5 -6.9284 0.0000
51074 ENSMUSG00000097325 Gm16897 predicted gene, 16897 -6.9277 0.0000
51073 ENSMUSG00000025795 Rassf3 Ras association (RalGDS/AF-6) domain family member 3 -6.9180 0.0000
51072 ENSMUSG00000067288 Rps28 ribosomal protein S28 -6.9145 0.0000
51071 ENSMUSG00000042099 Kank3 KN motif and ankyrin repeat domains 3 -6.9145 0.0000
51070 ENSMUSG00000041881 Ndufa7 NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 7 (B14.5a) -6.9145 0.0000
51069 ENSMUSG00000107659 Gm44170 predicted gene, 44170 -6.9127 0.0000
51068 ENSMUSG00000074802 Gas2l3 growth arrest-specific 2 like 3 -6.9124 0.0000
51067 ENSMUSG00000080878 Gm15618 predicted gene 15618 -6.9081 0.0000

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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