SHOGoiN Cell Methylome: GSM1200273

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM1200273


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5090101000001000000000-236Sequence Read ArchiveSRP023116SRP023116_M29Single cell methylome landscapes of mouse embryonic stem cells and early embryos analyzed by reduced representation bisulfite sequencingMethylomeSpermMouseGenitaliaBisulfite-Seq (RRBS)HiSeq 2000Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSMUSG00000030996 Art1 ADP-ribosyltransferase 1 5.9386 0.0000
2 ENSMUSG00000070424 Art5 ADP-ribosyltransferase 5 5.9386 0.0000
3 ENSMUSG00000003546 Klc4 Mus musculus kinesin light chain 4 (Klc4), transcript variant 2, mRNA. 5.7137 0.0000
4 ENSMUSG00000105291 Gm18901 predicted gene, 18901 5.6147 0.0000
5 ENSMUSG00000105309 Gm21461 predicted gene, 21461 5.5850 0.0000
6 ENSMUSG00000031927 1700012B09Rik RIKEN cDNA 1700012B09 gene 5.5698 0.0000
7 ENSMUSG00000067610 Klri1 Killer cell lectin-like receptor subfamily I member 1 5.5691 0.0000
8 ENSMUSG00000009585 Apobec3 apolipoprotein B mRNA editing enzyme, catalytic polypeptide 3 5.5546 0.0000
9 ENSMUSG00000064550 Gm24623 predicted gene, 24623 5.4131 0.0000
10 ENSMUSG00000105871 Gm43147 predicted gene 43147 5.4131 0.0000

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
50998 ENSMUSG00000072889 Nfxl1 nuclear transcription factor, X-box binding like 1 -4.8224 0.0000
50997 ENSMUSG00000079470 Utp14b UTP14B small subunit processome component -4.8188 0.0000
50996 ENSMUSG00000028018 Gstcd Mus musculus glutathione S-transferase, C-terminal domain containing (Gstcd), transcript variant 1, mRNA. -4.8105 0.0000
50995 ENSMUSG00000028016 Ints12 Integrator complex subunit 12 -4.8105 0.0000
50994 ENSMUSG00000088211 Gm22083 predicted gene, 22083 -4.8074 0.0000
50993 ENSMUSG00000039231 Suv39h1 suppressor of variegation 3-9 1 -4.8074 0.0000
50992 ENSMUSG00000028232 Tmem68 Transmembrane protein 68 -4.8044 0.0000
50991 ENSMUSG00000046388 Gm9806 NA -4.8016 0.0000
50990 ENSMUSG00000100707 Gm28523 predicted gene 28523 -4.8009 0.0000
50989 ENSMUSG00000041741 Pde3a phosphodiesterase 3A, cGMP inhibited -4.8009 0.0000

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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