SHOGoiN Cell Methylome: GSM1370522

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM1370522


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6020500-761Sequence Read ArchiveSRP041257SRP041257_M1Single-Cell Whole-Genome Bisulfite Sequencing for Analysis of Epigenetic HeterogeneityMethylomeSecondary oocyte (Ovarian follicle)MouseGenitaliumBisulfite-Seq (WGBS)HiSeq 2000Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSMUSG00000105290 Gm43528 predicted gene 43528 4.1699 0.0000
2 ENSMUSG00000078656 Vps25 vacuolar protein sorting 25 2.5850 0.0000
3 ENSMUSG00000082994 Gm11848 predicted gene 11848 2.5850 0.0001
4 ENSMUSG00000084246 Gm15162 predicted gene 15162 2.5850 0.0000
5 ENSMUSG00000109354 Olfr706 olfactory receptor 706 2.5850 0.0001
6 ENSMUSG00000043308 Vmn1r75 vomeronasal 1 receptor 75 2.3219 0.0000
7 ENSMUSG00000053678 Defb40 defensin beta 40 2.3219 0.0006
8 ENSMUSG00000082520 Gm13349 predicted gene 13349 2.3219 0.0000
9 ENSMUSG00000085533 Gm12146 predicted gene 12146 2.3219 0.0006
10 ENSMUSG00000094820 Gm23805 predicted gene, 23805 2.3219 0.0000

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
51076 ENSMUSG00000099962 Gm28613 predicted gene 28613 -3.0000 0.6050
51075 ENSMUSG00000099896 Gm29278 predicted gene 29278 -3.0000 0.6050
51074 ENSMUSG00000099785 Gm28425 predicted gene 28425 -3.0000 0.6050
51073 ENSMUSG00000099548 Gm29220 predicted gene 29220 -3.0000 0.6050
51072 ENSMUSG00000101961 Gm28220 predicted gene 28220 -2.8074 0.5994
51071 ENSMUSG00000101804 Gm28813 predicted gene 28813 -2.8074 0.5994
51070 ENSMUSG00000101782 Gm28964 predicted gene 28964 -2.8074 0.5994
51069 ENSMUSG00000101125 Gm29625 predicted gene 29625 -2.8074 0.5994
51068 ENSMUSG00000099494 Gm28197 predicted gene 28197 -2.8074 0.5994
51067 ENSMUSG00000094911 Gm21921 predicted gene, 21921 -2.8074 0.5994

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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