SHOGoiN Cell Methylome: GSM1370522

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM1370522


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5030203000000000000000-761Sequence Read ArchiveSRP041257SRP041257_M1Single-Cell Whole-Genome Bisulfite Sequencing for Analysis of Epigenetic HeterogeneityMethylomeSecondary oocyte (Ovarian follicle)MouseGenitaliaBisulfite-Seq (WGBS)HiSeq 2000Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSMUSG00000105290 Gm43528 predicted gene 43528 4.1699 0.0000
2 ENSMUSG00000078656 Vps25 vacuolar protein sorting 25 2.5850 0.0000
3 ENSMUSG00000082994 Gm11848 predicted gene 11848 2.5850 0.0001
4 ENSMUSG00000084246 Gm15162 predicted gene 15162 2.5850 0.0000
5 ENSMUSG00000109354 Olfr706 NA 2.5850 0.0001
6 ENSMUSG00000043308 Vmn1r75 vomeronasal 1 receptor 75 2.3219 0.0000
7 ENSMUSG00000053678 Defb40 NA 2.3219 0.0006
8 ENSMUSG00000082520 Gm13349 predicted gene 13349 2.3219 0.0000
9 ENSMUSG00000085533 Gm12146 predicted gene 12146 2.3219 0.0006
10 ENSMUSG00000094820 Gm23805 predicted gene, 23805 2.3219 0.0000

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
50998 ENSMUSG00000108212 Gm44132 predicted gene, 44132 -2.0000 0.3714
50997 ENSMUSG00000107625 Gm34149 predicted gene, 34149 -2.0000 1.0000
50996 ENSMUSG00000105751 Gm43724 predicted gene 43724 -2.0000 1.0000
50995 ENSMUSG00000104578 Gm8929 predicted gene 8929 -2.0000 0.5994
50994 ENSMUSG00000104132 Gm36952 predicted gene, 36952 -2.0000 1.0000
50993 ENSMUSG00000103656 Gm37205 predicted gene, 37205 -2.0000 1.0000
50992 ENSMUSG00000103432 6720464F23Rik RIKEN cDNA 6720464F23 gene -2.0000 1.0000
50991 ENSMUSG00000102747 Gm37602 predicted gene, 37602 -2.0000 1.0000
50990 ENSMUSG00000102673 Gm37437 predicted gene, 37437 -2.0000 1.0000
50989 ENSMUSG00000101910 Gm28691 predicted gene 28691 -2.0000 1.0000

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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