SHOGoiN Cell Methylome: GSM1370530

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM1370530


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6020500-761Sequence Read ArchiveSRP041257SRP041257_M9Single-Cell Whole-Genome Bisulfite Sequencing for Analysis of Epigenetic HeterogeneityMethylomeSecondary oocyte (Ovarian follicle)MouseGenitaliumBisulfite-Seq (WGBS)HiSeq 2000Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSMUSG00000109354 Olfr706 olfactory receptor 706 4.3923 0.0000
2 ENSMUSG00000105566 Obox4-ps4 oocyte specific homeobox 4, pseudogene 4 3.0000 0.0000
3 ENSMUSG00000082540 Vmn1r-ps112 vomeronasal 1 receptor, pseudogene 112 2.8074 0.0000
4 ENSMUSG00000089307 Gm24843 predicted gene, 24843 2.5850 0.0001
5 ENSMUSG00000098115 Gm8816 predicted gene 8816 2.5850 0.0001
6 ENSMUSG00000082994 Gm11848 predicted gene 11848 2.3900 0.0000
7 ENSMUSG00000055430 Nap1l5 nucleosome assembly protein 1-like 5 2.3219 0.0000
8 ENSMUSG00000080903 Gm16383 predicted gene 16383 2.3219 0.0007
9 ENSMUSG00000082005 Gm7189 predicted pseudogene 7189 2.3219 0.0007
10 ENSMUSG00000098110 Gm26956 predicted gene, 26956 2.3219 0.0007

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
51076 ENSMUSG00000093405 Gm20684 predicted gene 20684 -1.9356 0.0000
51075 ENSMUSG00000057604 Lmcd1 LIM and cysteine-rich domains 1 -1.9308 0.0940
51074 ENSMUSG00000083921 Gm15750 predicted gene 15750 -1.9249 0.0000
51073 ENSMUSG00000087206 Gm16175 predicted gene 16175 -1.9246 0.0000
51072 ENSMUSG00000021423 Ly86 lymphocyte antigen 86 -1.9183 0.3711
51071 ENSMUSG00000105239 Gm43091 predicted gene 43091 -1.9175 0.0250
51070 ENSMUSG00000093587 Gm20554 predicted gene, 20554 -1.9168 0.0005
51069 ENSMUSG00000055471 Alk anaplastic lymphoma kinase -1.9140 0.0000
51068 ENSMUSG00000028631 Kcnq4 potassium voltage-gated channel, subfamily Q, member 4 -1.9131 0.0000
51067 ENSMUSG00000065047 Gm24045 predicted gene, 24045 -1.9130 0.0000

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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