SHOGoiN Cell Methylome: GSM1370530

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM1370530


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5030203000000000000000-761Sequence Read ArchiveSRP041257SRP041257_M9Single-Cell Whole-Genome Bisulfite Sequencing for Analysis of Epigenetic HeterogeneityMethylomeSecondary oocyte (Ovarian follicle)MouseGenitaliaBisulfite-Seq (WGBS)HiSeq 2000Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSMUSG00000109354 Olfr706 NA 4.3923 0.0000
2 ENSMUSG00000105566 Obox4-ps4 oocyte specific homeobox 4, pseudogene 4 3.0000 0.0000
3 ENSMUSG00000082540 Vmn1r-ps112 vomeronasal 1 receptor, pseudogene 112 2.8074 0.0000
4 ENSMUSG00000089307 Gm24843 predicted gene, 24843 2.5850 0.0001
5 ENSMUSG00000098115 Gm8816 predicted gene 8816 2.5850 0.0001
6 ENSMUSG00000082994 Gm11848 predicted gene 11848 2.3900 0.0000
7 ENSMUSG00000055430 Nap1l5 Nucleosome assembly protein 1-like 5 2.3219 0.0000
8 ENSMUSG00000080903 Gm16383 predicted gene 16383 2.3219 0.0007
9 ENSMUSG00000082005 Gm7189 predicted pseudogene 7189 2.3219 0.0007
10 ENSMUSG00000098110 Gm26956 predicted gene, 26956 2.3219 0.0007

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
50998 ENSMUSG00000062248 Cks2 Cyclin-dependent kinases regulatory subunit 2 -1.7925 0.1513
50997 ENSMUSG00000061619 Vma21-ps VMA21 vacuolar H+-ATPase homolog (S. cerevisiae), pseudogene -1.7925 1.0000
50996 ENSMUSG00000050239 Krtap24-1 keratin associated protein 24-1 -1.7925 0.0157
50995 ENSMUSG00000033538 Casp4 Caspase-4 Caspase-4 subunit p10 Caspase-4 subunit p20 -1.7925 0.3818
50994 ENSMUSG00000019936 Epyc Epiphycan -1.7925 1.0000
50993 ENSMUSG00000032375 Aph1b Gamma-secretase subunit APH-1B -1.7820 0.0040
50992 ENSMUSG00000106079 Gm43033 predicted gene 43033 -1.7814 0.2457
50991 ENSMUSG00000010054 Tusc2 tumor suppressor candidate 2 -1.7802 0.0000
50990 ENSMUSG00000025234 Arih1 E3 ubiquitin-protein ligase ARIH1 -1.7800 0.0000
50989 ENSMUSG00000074890 Lcmt2 tRNA wybutosine-synthesizing protein 4 -1.7797 0.0000

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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